Cordyceps militaris: CCM_03220
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Entry
CCM_03220 CDS
T03108
Name
(RefSeq) ATP dependent DNA ligase domain protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCM_03220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmt03400
]
CCM_03220
Enzymes [BR:
cmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCM_03220
DNA repair and recombination proteins [BR:
cmt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CCM_03220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DUF6300
Motif
Other DBs
NCBI-GeneID:
18165246
NCBI-ProteinID:
XP_006668434
UniProt:
G3J9H1
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MPLPFSAVCDLLEQSSQLCQQRKSNAAAVLAWFRRHRAAVDAHDADLAALLSTLLPEKRT
DRVYCLQVPTLERIVGRALMLGASRMLELATYKRPGAGVDFADCVERILSVTPNPIQESG
HQVTVEQVDELLHSLAARIRWSAPAIRQSSACMSHQSRGDLDAMYRRLSARDAKWFTRLV
LKDYQPLFFDAHLLYRACDPVLPCLLQIRDDFTEALGAIPIARGALLPIAAPRDSRPLCA
RRVLAAVKPKLGVKVGRQQWHKGRSIKHCMSMGSGRMSVETKLDGEYCQIHVDMSKPKKR
VQIFSKSGKDSTEDREKVIPAIERALRLNTTECVFKKACILEGELLVYNDLEKTIMPFHK
IRGHVTRRGRYFNTEQDSQPKPYEHLMIVYYDIFLLDDQGLMDVQHSERLKLLEKVIHYE
RGVAELVPRETIDFGHSLAASTLRKAFAKVVVERGEGLVLKPDEPYIVIGPNGRTAPCRC
IKMKKEYIGAFGDVGDFALVGAGFHAAKAKTYRIPNLKWTHFYVGCLNNKEQVKRWGHKP
DFTVVCAVELSEALLQSFLALGELSAVSRAANVATTLTVPPGIQCPANLTVAFTNPMVVD
LRCFSFDKPGNTGGLWTPRFPAVTKIHADRDYADVLTLDELQALAKEAVEKPVLEDSQEN
LHWIARLEGADPRGVAVDAVSQATATTMPTPSPANMTPSTASDSQSSKGATEPSRRSQSL
ASAPVVNEVKGWRDASVSIISIPTTSTAEAVSPTKAAMQAPAKRVPEMASPEQSLKRPRT
ASFRNTSPRKPLGNIDVNVSYSDSQSTNSQDSQATVKRGPPRAQTVQRDVIEIPSSDAED
DDLQQPPSQERHPQAVSHPPASSQEEKDSKDQHWSCKHVGEKCGFVGKTMLLASPALLRV
AELTTLFGDHGVDVQRVLPCVETWWRSAGLRTAGAAVPQQQKGCVVLLVDSVQQATETKA
LVARLNAARRQARREERDWITVYDWRVLRHLSIAEDASVTKKYYDGFQDPWRRWYCGLV
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccccttctcggccgtctgcgacctgcttgagcagtcgagccagctgtgccag
cagcgcaagagcaacgctgccgcggtgctcgcgtggttccgccggcaccgcgcggccgtc
gacgcgcacgacgcggacctcgcggcgctgctgtcgacgctgctgccggagaagcgcacc
gatcgcgtgtactgcttgcaggtgccgacgctggagaggatcgtcggccgggcgctgatg
ctcggtgcctcgcggatgctggagctggcgacgtacaaacggcccggcgccggcgttgac
ttcgctgattgcgtggagcgcatcctttccgtgactccgaatccgatacaggaaagcggt
catcaagtcacggtggaacaagtcgacgagctgctgcacagcctggccgcgcgcatccga
tggagcgccccggcgatccgccagtccagtgcctgcatgtcgcatcagagccgcggcgac
ctagacgccatgtacagacggttgtccgcgcgcgatgccaagtggttcacccggcttgtc
cttaaggactaccaaccgctattctttgacgcccacttgctataccgcgcctgtgacccc
gtgctgccgtgcctcctacagatccgagacgactttaccgaggctctgggtgcgattcct
attgctcgcggggcgctgctgcctatagcggcgccgagagattctaggccgctgtgcgcg
cggagggtactggccgcggtaaagccgaagttgggcgtcaaggttgggaggcagcagtgg
cacaagggccggagcatcaaacattgcatgagcatgggcagtgggcggatgagtgtggag
acgaagctggacggcgagtattgccagattcacgtggacatgagcaagccgaagaagagg
gtgcaaattttctccaaaagcggcaaggacagcacggaggatcgagaaaaggttataccg
gcgattgagagggcgctcaggcttaatacgactgagtgtgtctttaaaaaggcgtgtata
ctggagggcgagctgcttgtctataatgatttggaaaaaacgattatgccatttcataag
atccgcggtcatgtcacccgacgcgggcgatattttaatacggaacaagattcacagcca
aaaccatacgagcacctgatgatcgtctactacgacatcttcctcttggacgaccagggt
ctcatggatgtccagcactcggagcgactcaaactccttgagaaagtcatccactacgag
cgcggcgtcgccgagctggttccgcgcgaaacaattgactttggccactccctcgcggca
tcgactctgcggaaagccttcgccaaggtcgtcgtggagcgaggcgaggggctcgtcctg
aaacccgacgagccgtacattgtcatcggtcccaacggacggaccgcgccgtgtcgctgc
atcaagatgaagaaggaatacattggggcgtttggtgacgtgggcgactttgccctggtc
ggcgctggcttccacgccgccaaggccaagacgtaccggataccaaacctcaagtggacg
cacttttacgtcggctgcctgaataacaaggagcaagtcaagagatggggccataagccc
gactttaccgttgtgtgtgccgtcgagctctccgaagctctgctgcagtcatttctcgcc
ctcggcgagctgtcggccgtgtcgcgcgccgccaacgtcgccaccacgctcaccgtgccg
cccggcatccagtgccccgcgaaccttaccgttgcctttaccaaccccatggtcgtcgac
ctccgctgcttcagcttcgacaagcccggcaacacgggcggcctctggacaccgcgcttt
cccgccgtgaccaagatccacgccgatagggactatgcggacgtcctgacgttggacgag
ctgcaggccttggcaaaggaggcggtggagaagccagtgcttgaggacagccaggagaac
ctgcactggatcgcccggctagagggcgcggacccgcgcggtgtggcggtggacgcagta
agccaggcgacggcgacgacgatgccgacgccgtcgccggccaatatgaccccgagcacg
gcgtcggatagtcagtcgtccaaaggagcgacggaaccaagccgtcggagccagtcactg
gcttcggcgccggtggtgaatgaagtgaagggatggcgtgatgcctccgtctcgattatc
tcgatacccacgacatctactgccgaggcagtctctcctacaaaggcggcaatgcaggca
cctgcgaagcgcgtgccggagatggcatcgccggagcagagcttaaagcgtccacgcacg
gcgagctttcggaacacgtcgccgcgaaaaccactggggaacatagacgtgaacgtctcc
tacagcgactcccagtcgaccaacagccaggacagccaggccacagtgaaacgcgggccg
ccgcgggcccagacggtgcaacgagacgtcattgagataccgagctccgatgcagaggac
gacgacttgcagcagccgcccagccaagaacgacacccccaagcagtcagccatccgccg
gcctcttctcaggaagaaaaggacagcaaggaccaacattggtcatgcaaacacgtaggc
gaaaagtgcggcttcgtcggcaagacgatgctccttgcgagcccggcgcttctccgcgtc
gcggagctgacgaccctttttggcgaccacggcgtggatgtgcagcgcgtcctcccctgc
gtcgagacatggtggcgcagcgctggactgcgaacggcgggggcggcggtgcctcaacaa
cagaagggctgcgtcgtgctgctcgtcgacagcgtccagcaggccaccgagaccaaggcg
ctcgtggcgaggctcaatgccgcgcggaggcaggcgcggagggaggagcgcgactggatt
accgtgtacgactggcgcgtgctgcggcacttgtcgattgcggaggacgcgagtgtgacc
aagaagtactatgatgggttccaagatccgtggagacggtggtattgtggactggtgtaa
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integrated database retrieval system
