Chelonia mydas (green sea turtle): 102933550
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Entry
102933550 CDS
T02989
Symbol
KDM2B
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102933550 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmy03000
]
102933550 (KDM2B)
04121 Ubiquitin system [BR:
cmy04121
]
102933550 (KDM2B)
03036 Chromosome and associated proteins [BR:
cmy03036
]
102933550 (KDM2B)
Enzymes [BR:
cmy01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
102933550 (KDM2B)
Transcription factors [BR:
cmy03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
102933550 (KDM2B)
Ubiquitin system [BR:
cmy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
102933550 (KDM2B)
Chromosome and associated proteins [BR:
cmy03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102933550 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
102933550 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
102933550
NCBI-ProteinID:
XP_007058353
LinkDB
All DBs
Position
15:complement(25993170..26160162)
Genome browser
AA seq
1265 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVCIRSFNLEEKLKTQKYHGNFVR
AMEGKDFTFEYVQREALRVPLLFRSKDGLGIKMPDRDFTVRDVKLLVGSRRIVDVMDVNT
QKGIEMSMSQFVRYYETPEAERAKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVELCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDATRKPSIDSFSSDSWLDMDEESCDAHTREEKEDNLDKNTKSLGDGCSSPNSTH
SEGKDVAGKKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWNHLTE
FELKGLKALVEKLXSLPENKKCVPEGXEDPQALLEDMKNILKEHADDDQNLAISGVPVVA
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KMNRDNKEVTDVAKRKGECEETPRRKSDEHSKKNPVDSILRRKSDDAHMRRKRKFEKPQE
PAMRKRLKLGKEEKLFRKKRRSWKATDDRPAMAKPLRRFKQEPEEDLPEAPPKSKESDQS
RSSSPTAGPSTESAEPRDKKKIKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQ
PIKSEPESENEEPKRALCNSERLHRFSKGLNGTPRELRHQLVPSLRSTPRVITRPPPSLS
PPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHSDLCICMRVCKT
WNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGL
RDLLLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSK
LRNVVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVSDQSINLLTAVGTTTRDSLT
EINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKL
LQKLS
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggtagaaggagatacgatgagaatgaggacctctcggacgtggaggaaattgtctgcatc
aggagttttaatttggaggagaaattaaagactcaaaagtatcatggaaatttcgtgcgt
gccatggaagggaaagattttacttttgagtatgtgcaaagagaagctctcagggttccc
cttctcttcagaagtaaggatggactgggaattaaaatgcctgaccgggatttcactgtc
agagatgtgaagttattagtgggaagccgtcggattgtggatgtgatggatgtgaacacg
caaaagggaattgagatgagcatgtctcagtttgtgagatactatgaaacaccagaggct
gaacgtgcgaagctctacaatgtcatcagcctggagttcagtcacacaaagctggaaaac
attgtcaagcgccccaatgtggtggacttagtcgattgggtggataatatgtggccacag
catttgaaggagaggcagacagatgccacgaatgctatttcggagatgaagtatccaaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgaggagggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctgtcgggaaagcaaagtgat
atctttctgggagacagggtggaactatgccaaagaattgagttgaaacaaggctatacg
ttttttattccttcaggatggatacatgcagtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttttggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagaataccag
aaagaatcaatgttaattgatgccacaagaaaacccagcatagacagcttctcatcagat
tcctggttagacatggatgaagaatcttgtgatgctcatacccgggaggagaaagaagac
aatttggataagaacacaaagtccttgggtgatggttgctcctcgcccaacagcacacac
tctgaagggaaggatgttgcagggaaaaaacagaaagccacagtaatgaggtacctcaaa
agaactttgtccaatgagtcagatgacagtgtaaagtcaacaacccccacggactatccc
aaaacacccacagggtcgccagctacagaagtctcaaccaagtggaatcatctcacagag
tttgaactgaaaggtttgaaagccctagtagaaaagcttngatctctcccagagaacaag
aagtgtgttccggaaggcnatgaggatcctcaggcacttctggaggatatgaagaacatt
ctgaaggaacatgctgatgatgaccagaatcttgccatttcgggggtccctgtggtagcc
tggcctaagaagaccacaaagaacagagcagttggacgacccaaagggaaactgggcact
gcctctgcagtgaagctagctgctaatcggacgactgcaggagcgcgccggagaaggacg
cgatgccgcaagtgcgaggcttgtctacgtacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaagtttggtgggcctggaaggatgaagcagtcctgcattatgaggcagtgc
atcgcaccagtgctgcctcataccgctgtgtgtctagtgtgtggagaagctgggaaggag
gacactgtggaagaggaggagggcaagtttaatctcatgctaatggaatgttccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgat
gaactaccgaactgctgggaatgtccaaagtgcaaccatgcagggaaaactgggaaacaa
aagcgtggaccaggattcaaatatgcgtcgaatctcccaggctcactgcttaaggaacag
aagatgaacagagataataaggaagtaacagatgtagcaaaacggaaaggggaatgtgaa
gaaacccccaggcggaaatctgatgaacattccaaaaaaaaccctgttgattctattttg
aggagaaagtcagatgatgcgcatatgcgaaggaaaagaaaatttgagaaaccccaagaa
cctgctatgagaaaacggctaaaacttggtaaagaagagaaactcttcaggaaaaagagg
cgatcatggaaggctacagatgaccgacctgccatggccaaacccctgcggcgttttaaa
caggaacctgaggaggatctgccagaagcacctccaaaatccaaggagagtgaccagtcg
cggtcgagctctcccactgcgggccccagcaccgaaagtgctgagcccagggacaagaag
aagataaagatgaggcggaaaaggcggcttccaaataaagaactgagcaaagagctcagc
aaggagctcaatcaggagatccaaaaaaccgagaacagccttgccaacgagaaccaccaa
cccatcaaatctgagccagagagcgagaatgaggagcccaaacgtgctctgtgcaatagt
gagagactccacaggttcagcaaagggttaaatgggactcccagggagctgaggcaccag
cttgtgccaagcctgcgaagcacacctagggtgattactcggccaccaccttcactctct
cctcccaaatgcattcagatggaacgccatgtaatcaggccaccccccattagccctcct
ccggactcactccccctagatgatggggcagcccatgtgatgcaaagggaagtctggatg
gctgtctttagctacctcagtcatagcgacttgtgcatctgtatgagagtttgtaagacc
tggaacagatggtgctgtgataaaagattgtggaccaaaatagatctaaaccattgtaaa
tccatcactccacttatgctcagtggcattatcaggagacagcctgtaacccttgatctt
agctggacaaacatatctaaaaaacagctgagctggctcatcaacagactcccaggtcta
cgagacctgttgttatcagggtgttcatggatagccgtctcagcactttgtagttccagt
tgtcctttactccgaaccctggatgtgcagtgggtggaaggattaaaagatgcacaaatg
agagacctcttgtcaccaccaacagataacaggccaggtcaaattgacaaccgaagtaaa
ctacggaacgtagttgagctgcgtttggctggtctggatattacagatgcttctttgcga
ttgatcattaggcacatgcctctgctttccaaactcaatcttagttactgtaaccatgtg
tcagatcagtctattaacctgctgactgcagtaggaaccaccacgcgtgattccttaact
gaaattaacttatcagattgcaataaggttactgaccagtgcctgtcctactttaaacgt
tgtggaaacatatgtcaaattgacttgaggtactgcaagcaagtgacaaaggaaggctgt
gagcagttcatagcagagatgtctgtgagtgttcagtttggtcaggtggaagagaaactt
cttcaaaaactgagttag
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