Chelonia mydas (green sea turtle): 102938282
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Entry
102938282 CDS
T02989
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cmy04040
]
102938282 (SCN4A)
Ion channels [BR:
cmy04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102938282 (SCN4A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
102938282
NCBI-ProteinID:
XP_007069104
LinkDB
All DBs
Position
27:216159..330912
Genome browser
AA seq
1835 aa
AA seq
DB search
MAIPPHVPSPDNLRPFTRESLAAIEQRIAEAEQLQIKRQHVEVLEEEELKASSDLEAGKP
LPRIYGDLPPELIGVPLEDLDPFYNDKKTFIVLNKGKAIFRFSATPALYMLGPFNPLRRG
AIKVLIHSLFSMFIMITILTNCVFMTMSDPPPWAKNVEYTFTGIYTFESMIKIVARGFCI
DQFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGAL
VQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCIRWPPPINDTLQEDIFGMDNDMF
ANSTLSSNTTGLSNGTFDWDSYINDEGNFYFLEGSLDALLCGNSSDAGKCPEGYMCMKAG
RNPNYGYTSYDTFSWAFLSLFRLMTQDYWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLI
NLILAVVAMAYAEQNDATMLEEQQREAEFQQLLEQLKKHQEEQEKLLRDRKSSGISQSSS
ALNKKMGDSAPAAADNQGKSKDCNGRVIASVVLERSATVEEPSPVDKQDKSDPDHLLAGG
QNGPGLQQRADSAVSMISNTMEELEEARQKCPPWWYKFAQTFLVWDCCPLWLKLKAFIRL
IVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLSVGNLVFTGIFTAEMVLKLIALD
PYDYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKII
GNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKEYVCKISLDCTLPRWHMYDFFHAFLI
IFRILCGEWIETMWDCMEVAGQPMCLIVFLMVMVIGNLVVLNLFLALLLSSFSADSLAAS
DDDGELNNLQIAIGRITRAIDFVKRTVLTLLHLQWKEKREPAEEQEDNKKDNYVLNHMDS
GQDSKSEYMDGVAGKEQLFVDELDHMNFINNPNLTVHVPIASEESDLYDEETSTQSDTED
TKKPLSRGSTSSLCSTVDYKAPEVEAEEAADEAAEGQGPEECFTEACVRRFPFLYVDITT
DKGKIWWNLRKTCFKIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKVIRTILEYADKI
FSYVFVLEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLTANWLGYSELGAIKSLRTL
RALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCIN
TTTDELFDISEVNNKSDCLALLHTNQVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMY
AAVDSREIEEQPQYETNLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPHNKCQGLVFDFVTKQAFDIIIMVLICLNMVTMM
VETDDQSPTKINILYNINMIFIVVFTGECLLKMFALRYYYFTIGWNIFDFVVVILSIGGI
VLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFL
VMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPP
DCDPDLENPGSSVKGDCGNPSIGICFFCTYIIISFLIVVNMYIAIILENFNVATEESSEP
LCEDDFEMFYETWEKFDPDATQFIAYSVLSDFVDTLQEPLKIAKPNKIKLITMDLPMVVG
DKIHCLDILFALTKEVLGDSGEMDGLKATMEEKFMAANPSKVSYEPITTTLKRKHEEVCA
IKIQRAFRRYLLKRSMKQASYLYRHSQEEGAFAEGAPEKEGLIVDKMHEIYGNSDTHLEM
APGLALVPVASPETRAAPREAKKRDGEREVKESLV
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccgccacatgtacccagtcccgataatctccgcccgttcacgcgcgagtcc
ctcgcggccatagagcagcggattgctgaagcggaacagctccagatcaaacggcagcat
gtggaagtgcttgaggaggaagagctgaaggccagcagcgatttggaagctgggaaaccc
ctcccgcgcatttatggggatctgcctcctgaacttatcggggtgcccttggaagaccta
gaccccttctacaacgataaaaagacattcatcgtcctaaacaaaggaaaagcaatcttc
cggttcagcgcaaccccggccctatacatgctgggacccttcaatcccctcaggagaggt
gccatcaaagtgcttatacattcattattcagcatgtttatcatgatcaccattttgacc
aactgtgtgttcatgacaatgagcgacccgccaccgtgggccaagaacgtggaatacacc
ttcactgggatatacaccttcgagtccatgataaagatagtagccagaggattttgcatt
gaccaatttacattcctacgtgacccatggaactggctggatttcagtgttatcgttatg
gcttacaccacagagtttgtggatttgggaaatgtctcagctctacgaacgttccgtgtc
ctccgcgcactgaaaacaatcaccgtgattccagggttgaagacaattgttggagctttg
gtacagtccgtgaagaagctctctgacgtcatgattctcaccgtcttctgtctgagtgtt
tttgcactggttggccttcagttgttcatggggaaccttcggcaaaaatgcatcaggtgg
ccaccccctataaacgacactttgcaagaggacatcttcggaatggacaatgacatgttc
gctaactcaactctctccagcaacacaactgggttgagtaatgggacttttgactgggat
tcttacatcaacgatgaagggaatttctactttctggagggctcactggatgctctgctt
tgcgggaacagcagcgatgccgggaagtgccctgaaggatatatgtgtatgaaagcagga
aggaatccgaactatggctacaccagctatgatacttttagctgggctttcctttctctc
ttccgcctcatgactcaggactattgggagaatctcttccagctgaccctccgcgccgct
gggaaaacatacatgatcttctttgtggtggttatattccttggttccttctacctcatc
aacctgatcctggctgttgtagcaatggcctacgccgagcagaacgatgctaccatgctg
gaggagcagcagagagaggcagagtttcagcagctcctggagcagctgaagaagcatcag
gaggaacaagagaaactgttacgagaccgtaaatcaagtggcatctcccagagcagcagt
gcattgaacaagaagatgggggactctgccccagctgcagctgacaaccaaggcaaatcc
aaagactgcaacgggcgagtcattgccagtgtcgtgctggagcgctcagcgacagttgag
gaaccaagtcctgtggataagcaagacaagtcggatcctgatcacctgctagcgggcggc
caaaacgggcctggtctccagcagagggcagatagcgcagtcagcatgatctctaacacc
atggaagagctagaggaagctcgccagaagtgtccaccctggtggtataaattcgcccag
acattcctggtctgggactgctgccccctctggctgaagctgaaggcgtttatacggctg
attgtgatggacccgtttgtcgacctggggatcacaatctgcattgtgctcaacacgctg
ttcatggccatggagcactacccaatgaccgaagagtttgagaacgtgctgagtgtgggc
aacctggtcttcactgggatcttcaccgcggagatggtgctaaagctcatagccctggat
ccctacgattacttccagcaggggtggaacatatttgacagcatcattgtcaccctgagc
ttggtggagctgggcctggccaatgtgcaggggctctctgtgctccgatccttccgcctg
ctgagagttttcaagcttgccaagtcctggccgaccctcaacatgctgataaagatcatt
ggcaactctgtgggcgctctgggaaacctcaccctggtactggccatcatcgtcttcatc
tttgccgtggtgggcatgcagctgtttgggaagagctataaggagtacgtgtgcaagatc
tctctggactgcacgctgccccgctggcacatgtacgacttcttccacgccttcctcatc
atcttccgcatcctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggcc
ggccagcccatgtgcctcattgtcttcttgatggtcatggtcatcgggaacctcgtggtc
ctgaaccttttcttagctttgctgctgagctccttcagcgccgatagccttgcggcttct
gatgatgatggtgagttgaacaatttgcagattgctattggcaggatcaccagggcaatt
gactttgtaaagagaactgtcctcacactacttcacctgcagtggaaggagaagagagag
ccggccgaggaacaagaggataataagaaagacaactatgtgctaaaccacatggattcg
ggccaggattccaagtcggagtatatggatggagtagctgggaaagagcagttgtttgtg
gatgagctggaccacatgaatttcattaacaaccccaacctgactgtccacgtgccaatt
gcctcggaggagtcggacctctacgatgaagaaacaagcactcagtcagacacagaagac
accaagaagccgctgtccagaggcagcacgtcatccctatgcagtaccgtggattacaaa
gcaccagaggtagaggcagaggaggctgcagacgaggctgccgagggccaggggcctgag
gagtgcttcaccgaggcctgcgtgcggcgctttcctttcctctacgtcgacatcacaacc
gacaaggggaagatctggtggaatcttcggaaaacctgtttcaagatcgtcgagcacaac
tggtttgagacctttatcatcttcatgatcctcctcagcagtggagcgctggcttttgaa
gacatctacattgagcagcggaaggtgatccgcaccatcctggagtacgctgacaagatc
ttctcctacgtgtttgtcctcgagatgctactcaagtgggtggcctatggtttcaaggtg
tacttcaccaacgcctggtgctggcttgattttctcattgtggatgtttccattatcagc
ttgacagcaaactggctgggctattctgaactgggcgccatcaaatcgctgaggactctt
agggctttgcgaccactgcgggctctgtcaagattcgaaggcatgagggtggtggtgaac
gccctgctgggtgccatcccctccattatgaacgtcctgctggtctgcttgatcttctgg
ctgatattcagcatcatgggggtgaacctgtttgcggggaagtactaccggtgcatcaac
accaccacggacgagctctttgacatcagcgaggtgaacaacaaaagcgactgcctggcg
ctgctccacaccaaccaggtgcgctgggtcaacgtcaaggtcaacttcgacaacgtgggc
ttgggctacctgtccctgctgcaggtggccaccttcaaaggctggatggacatcatgtat
gcggccgtggactcccgcgagatcgaagaacagccgcagtatgagaccaacctctacatg
tacatctacttcgtcatcttcatcatctttggcgccttcttcaccctcaacctcttcatc
ggtgtcattatcgacaacttcaaccagcaaaagaaaaagtttggagggaaggacatcttc
atgacggaggagcagaagaaatactacaacgccatgaaaaagcttggatcaaagaagccc
cagaagccaatccccaggccccataacaaatgtcaggggctggtgtttgactttgtgaca
aagcaagcttttgacatcatcatcatggtcctgatttgtcttaacatggtgaccatgatg
gttgaaacagatgaccaaagcccaaccaaaatcaacatcctctacaacatcaacatgatt
ttcatcgtcgtcttcacgggcgagtgcttgctcaaaatgtttgccttgcgctattactac
ttcaccattggctggaacatcttcgactttgtggtggtcatcctctccatcggaggtatc
gtcctttccgacatcatagagaagtactttgtgtcccccaccctcttccgggtgatcagg
ttggcaagaattgggcgtgttctgcggctgatccgaggagcaaaaggaatccggactctc
ttgtttgctttaatgatgtctctccctgctttgttcaacatcggcctcctgctgttcttg
gtgatgttcatctactccatcttcgggatgtccaactttgcctacgtcaagaaggagtct
gggatcgacgacatcttcaattttgagacgttcgggaacagcatcatctgcttgtttcag
atcacgacatctgccgggtgggatggtctcctcaaccctatcctgaacagtggcccaccg
gactgcgacccggacttggagaatcctggaagttcggtaaaaggagactgcggcaaccca
tccattggcatctgctttttctgcacctacatcatcatctcctttctgattgttgtgaac
atgtacatcgccatcatcctggaaaacttcaacgtggctacagaggagagcagcgaacca
ctctgcgaagatgactttgaaatgttctatgaaacgtgggaaaagtttgatccagatgcc
acccagtttatcgcgtacagcgtgctgtcggattttgtagacaccttgcaagagccactc
aagattgccaaaccaaacaagattaaattaatcaccatggatttaccaatggtcgtcgga
gataaaatccactgtctggatattctctttgcactgactaaagaagtgctgggtgactct
ggggaaatggacggcttgaaagccacaatggaggagaaattcatggctgccaacccatcc
aaggtttcctatgaacccatcactacgactttgaaaaggaagcacgaggaagtctgtgcc
ataaaaatccaaagagccttccgaaggtatttgctaaagcgatcaatgaaacaggcttct
tatctgtacaggcatagtcaagaggagggcgcctttgcagagggagcgccggaaaaagaa
ggactgatcgtagacaaaatgcatgagatttatgggaacagtgatacacacctggaaatg
gccccaggcctggctcttgtgccagttgcaagcccagagactcgagctgctcctagggag
gcgaaaaaaagggatggggagcgagaggtgaaagagtcgttagtatag
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