Chelonia mydas (green sea turtle): 102938959
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Entry
102938959 CDS
T02989
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X2
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy04010
MAPK signaling pathway
cmy04120
Ubiquitin mediated proteolysis
cmy04140
Autophagy - animal
cmy04144
Endocytosis
cmy04620
Toll-like receptor signaling pathway
cmy04621
NOD-like receptor signaling pathway
cmy04622
RIG-I-like receptor signaling pathway
cmy05132
Salmonella infection
cmy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102938959 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102938959 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102938959 (TRAF6)
04140 Autophagy - animal
102938959 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102938959 (TRAF6)
04621 NOD-like receptor signaling pathway
102938959 (TRAF6)
04622 RIG-I-like receptor signaling pathway
102938959 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102938959 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
102938959 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102938959 (TRAF6)
04121 Ubiquitin system [BR:
cmy04121
]
102938959 (TRAF6)
Enzymes [BR:
cmy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102938959 (TRAF6)
Membrane trafficking [BR:
cmy04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
102938959 (TRAF6)
Ubiquitin system [BR:
cmy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
102938959 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
Med21
DUF4455
SlyX
RING_XB3-XBAT31
TRAF3_RING
PspA_IM30
zf-RING_11
CENP-F_leu_zip
HMMR_N
DUF16
U-box
PUMA_CC
ATG16
Sina_ZnF
DUF7310
DUF1664
zf-C2H2_4
Spc29
DUF7607
TMF_DNA_bd
DUF948
Motif
Other DBs
NCBI-GeneID:
102938959
NCBI-ProteinID:
XP_007055299
LinkDB
All DBs
Position
6:complement(54173728..54209090)
Genome browser
AA seq
546 aa
AA seq
DB search
MSLIQSDNSYRARDLETGCCAAMASACSAGAKEDSIGVSVSSGTGNLPNSFTEETQGYDV
EFDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLF
PDNFAKREILSLKVRCPNKGCLLKMELRHLEEHQLNCDFCSVECPQCQGSFQKNQLQNHM
TLECPRRQVCCPNCATSMAYEDKELHDQNCPLANVFCEYCNTVLIREQMPNHYDNDCPTA
PVPCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLRSISVTTTPMSYLSGLSFEPS
LFSHVPPATYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQSAHVGDLKRTIQN
LEEKITEMEAQQCNGIYIWKIENFSTYLRAQEEERPVVIHSSGFYTGKPGYKLCLRLHIQ
LPNSQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGHVRQNHEEVMEAKPEL
LAFQRPAIQRNPKGFGYVTFMHLQALKQRTYVKDDTLLVRCEVVTRLDLNSVRREGFQPR
STDGAV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgatacagagtgacaacagctatagagccagagatctggagactggctgctgt
gcagccatggccagtgcgtgcagtgctggagctaaagaagacagcataggtgtctctgtc
agcagtgggactggaaaccttcccaactccttcacggaggagactcaaggatatgacgtg
gagtttgatccccccctggaaagtaaatatgaatgtccaatctgtttgatggctctacgg
gaagcagtgcaaacgccatgcggacaccggttttgcaaaggctgcattgtcaaatcaata
agagatgcaggtcacaaatgtccagtagacaatgaaattctactcgaaaaccaactcttc
cctgacaactttgccaaacgggaaatcctctcactgaaggtgagatgtcccaacaagggc
tgtcttctaaaaatggagctgagacatctagaggagcatcagttgaattgtgacttctgc
tctgtggaatgcccacaatgccagggctccttccagaagaaccagctgcaaaaccacatg
acactggaatgcccacggcggcaggtctgctgtccaaactgtgccacatctatggcttat
gaagataaagagcttcatgaccagaactgtccacttgcaaatgtgttttgtgaatattgc
aatacagtgctcatcagagaacagatgcctaatcattatgataatgactgccctaccgcc
ccagtaccatgtacatacagtgcctttggatgtcctgaaaagatgcagaggaatgagttg
gcacgtcatatgcaagagttcactcaggttcacatgagaatgatggctcagactctccgg
agtattagtgttactacaactcccatgtcctacctcagtggcctatcctttgagccgtct
ctcttctcacatgtcccacctgccacatatgactgcaacccagaagttgagaacttcaag
gaaaccattcagcagttggaaggtcgactggtaagacaagatcaccaaatcagagagctt
attgctaaaatggagactcagagcgctcacgtgggagacctcaaacgcactatccaaaat
ctagaggaaaaaattactgaaatggaggcacaacaatgtaacggcatttacatctggaag
attgagaacttcagcacatatctgagagcccaagaagaagagagacctgttgtgatccac
agctctggtttctacactgggaaaccaggctacaaactgtgtttgcgcctacatatccag
ttaccaaattctcagcgctgtgctaactttatatccctctttgtccatactatgcaagga
gaatatgacagtcatctgccttggccatttcagggcaccatacgactttctattttggat
caatcagagggacacgtaaggcagaatcacgaagaagtcatggaagccaaacctgagctt
ctagccttccagagaccagcaatccagcgcaacccaaaaggttttggttatgtgacattc
atgcacctgcaagctttgaagcaaagaacctatgtaaaagatgataccctcctggtgcgc
tgtgaggttgtaacacgtttagacttgaacagtgtacggagagagggctttcaacctcgc
agtactgatggggctgtatag
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integrated database retrieval system
