Chelonia mydas (green sea turtle): 102939484
Help
Entry
102939484 CDS
T02989
Symbol
OTOF
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmy04131
]
102939484 (OTOF)
Membrane trafficking [BR:
cmy04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
102939484 (OTOF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
H-K_ATPase_N
Motif
Other DBs
NCBI-GeneID:
102939484
NCBI-ProteinID:
XP_037749670
LinkDB
All DBs
Position
3:complement(3647866..3845395)
Genome browser
AA seq
2007 aa
AA seq
DB search
MALLVRLKAVTELRGKGDRLAKAAFRGLSFYTRVLENCKDEARFDETFRWPIASNIDGNE
MLEIQVFNYSKVFTNRLIGTFRMVLQKVVEEGQLEVTDTLIDDNNSAIRTSVSIEIRYQA
MDGTVGAWNDGEFLESPNYRSEGEGPLETESLLPGHRQGSAVSPGKSNPSLKPAERNFRR
AGKGVFSAMKLGKIRPPKEDPHRKQDEPAILEAGDLDRKAMRLGGGLDLDTISLASVTAV
TTDVSNKRSKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGEEKKYTSMK
ESTNCPYYNEYFVFDFHVPPDVMFDKVIRLSVIHSKNLLRSGTLVGSFKMDVGTVYTHPE
HQFYHKWATLSDPEDITAGLKGYLKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPDG
IPPERQWARFYIKIYRAEGLPRMNTSLMANVKKALIGENKDLVDPYVQVLFAGQKGKTSV
QKSSYEPLWNEQIIFTEMFPPLCKRLKVQIRDSDKVNDMAIGTHFIDLRKISNEGDKGFL
PTFGPAWVNMYGSTRNYTLMDEHQDLNEGLGEGVSFRARLLLSLAVEILDTSNPEITSST
EVQVEQATPVADNCTGKMEEFFLFGAFLEATMIDRKIGDKPINFEVTIGNYGNRIDGTAK
LSLKKKKEGGDGKQEDSELLQRSSEDEADDDGELASVSSTQPMKPLITDRNYFHLPYFEK
KPCIYIKSWWQDQRRRLYNANIMDKIADKLEEGLNDVQEMMKTEKPHPERRLRGVLEELS
SGCFRFVTLSNKDQSLSARTRLDRERLKSCMRELENMGQQAKTLRSQVKKNTMRDKLKLV
QNFLQKLRFLADEPQHSIPDIFIWMMSNGKRIAYARIPSKDILYSIVDEETGKDCAKVKT
VFLRLPGKRGFGPAGWTVQAKMEIYLWLGLNKQCKDFLSGLPCGFEEKKASKGLGLQAFP
PISLLYTKKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFITQGQCTEVLNETLCPTWD
QLLVFDNVELYGEAHEMRDDPPIIVIEIYDQDTVGKADFMGRTFAKPVVKMSDEDYGPPR
FPPQLEYYQIYRGNSTAGDLLAAFELLQIGPAGKSDLPPIDGPTDTEQGPILPVPLGIRP
VLSKYRVEILFWGLRDLKRVNLAQVDRPRVDIECAGKGVQSALIQNYKKNPNFSTLVKWF
EVDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIHRPPDKKSQHWNTAAKLL
NGYLALANRGPYYRLPGEIVISMEPEVPIKKMETMVKLEANSDAVVKVDMQSEEEKEKKK
KKKKGGGEEIEEEEPDESMLDWWSKYFASIETMKEQLRQQEAAAAEAEEKEELEIAEGSK
GQAKTKEKVKAPKEDKKKKQQQPPEAPEKKNKQKIDELKVYNKELEMEFDSFEDWLHTFS
LFRGKIGDNDETTTEEERIVGRFKGSMCVYKVPLPDDITKEAGYDPNFGMFQGIPNNDPI
NVLVRVYIVRATDLHPADINGKADPYIAIRLGKTDIKDKENYISKQLNPIFGKSFDIEAT
FPMESMLTVAVYDWDLVGSDDLIGETKIDLENRYYSKHRATCGISQTYSTHGYNMWRDPG
KPTQILSKLCKEGKVDGPHYGPGGRVKVANRVFTGPREMEDENGQKKQTDEHLALAVLRH
WEEIPRVGCKLVPEHVETRPLLNPDKPGIEQGRLEMWVDMFPMDMPAPGPAIDISPRKPK
RYELRVIVWNTDEVILEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFN
WRYVFPFDYLMAEEKIVISKKESMFSWDETEYKIPARLTLQVWDADHFSADDFLGAIELD
LNRFPRGAKTAKQCSMDMVTNEGDLPLVSIFKQKRVKGWWPFVARNENDELELTGKVEAE
LHLLTAEEAEKSPAGLARNEPDPLEKPNRPDTSFIWFLNPLKSIRYFIWHTYRWLLLKLL
LLLLALLLVGLFLYSMPGYLVKKLLGA
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgctcgtgcgcctcaaggcggtgaccgagctgcggggcaagggggaccggctt
gccaaggcggcgttcagaggtctctccttctacacccgagtacttgaaaactgcaaggat
gaggccaggtttgacgagaccttccgatggccaatcgccagcaatatcgatggcaacgag
atgctggagatccaggtgttcaactacagcaaagtcttcaccaacagactcatcggcacg
ttccggatggtcctgcagaaggtggtggaggaaggccagctggaggtgacggacacttta
atagacgacaataactccgccattcggaccagcgtctccatagagatcaggtaccaggcc
atggatggcaccgtgggcgcctggaatgacggggaatttctggagagtcctaactaccgg
tcggagggcgaaggcccgttggagacagaaagcctgctccccgggcaccggcagggctcg
gccgtgtctcctggcaaatccaaccccagcctgaaaccggcagagaggaacttcaggaga
gctgggaaaggagtcttttcagccatgaagctgggcaagatacggcccccaaaggaagac
cctcaccgaaagcaagatgaacctgccattctggaggcaggagacctggaccggaaagcc
atgcggctcggaggaggcctcgacctagacaccatttctctggcttcggtcacagccgtt
accaccgacgtgtcgaataagaggtcaaagcctgacattaaaatggagcccagtgctggc
cggccaatggattaccaagtgagcatcacagtcatcgaggcccggcagctggtggggctg
aacatggaccccgtggtgtgcgtggaggtgggggaagagaagaaatacacatccatgaag
gagtcaaccaactgcccctactacaatgagtacttcgtctttgatttccacgtgcccccg
gacgtcatgttcgataaagtcatcagactgtcggtcatccactctaagaacctcttgcgc
agtgggaccttggtgggctccttcaaaatggatgttgggaccgtttacacgcaccctgag
catcagttctaccacaaatgggccaccctgtccgatcccgaggacatcacggccggcttg
aaagggtacctgaagtgtgacatcgctgtggtggggaaaggggacaacataaagacaccg
cacaaagccaacgagacagacgaggatgacatcgaggggaacctgcttcttccagatggc
atcccgccagagcggcagtgggcccgtttctacatcaagatctaccgcgcggaggggctg
ccccgcatgaacaccagcctcatggccaacgtgaagaaggcactcatcggagagaacaag
gatctggtggacccctacgtccaggtgctgtttgcagggcagaaggggaaaacgtcagtg
cagaagagcagctatgagcccctgtggaacgagcagatcatcttcacggagatgttcccc
cctctgtgcaagcggctcaaggtccagatccgggactcggacaaggtcaacgacatggcc
atcggcacccacttcattgacctgcgcaagatctccaacgaaggggacaaaggcttcctg
cccaccttcggcccagcctgggtgaacatgtatggctccacccggaactacaccctgatg
gatgagcaccaggacctgaacgagggcctgggcgagggcgtctccttccgcgcccggctg
ctcctcagccttgccgtggagatcctggacaccagcaacccggagatcaccagctccaca
gaggtgcaagtggagcaggccacgccggtcgctgacaactgcacgggcaaaatggaagag
ttctttctctttggagccttcctggaagcaaccatgattgacaggaagatcggggataaa
cccatcaactttgaggtcacaataggcaactacgggaaccggatcgacggcacggccaag
ctcagcctgaagaagaagaaggagggcggggatggcaagcaggaggactctgagctgctc
cagcgctcgagcgaggacgaagccgatgacgacggggagctggcctctgtctcctcgact
cagccaatgaagcccctgatcacggacaggaactacttccacttgccttacttcgagaag
aagccctgcatctacatcaagagctggtggcaggaccaaaggcggaggctctacaatgcc
aacatcatggacaagatcgccgacaagctggaggaggggctcaacgacgtgcaggagatg
atgaagacggagaagccgcaccctgagcgccggctccgaggggtcctggaggagctgagc
agcggatgcttccgctttgtgaccctctccaacaaagaccagagcctctccgcccggacc
cgactggaccgagagcggctcaaatcctgcatgcgggagctggagaacatgggccagcaa
gccaagaccctgcggtcgcaggtgaagaagaacacgatgagggacaagctgaagctggtg
caaaactttctgcagaagctccgcttcctggcggatgagccacagcacagcatccccgac
atcttcatctggatgatgagcaatggcaagcgcatcgcctatgcccgcatcccctccaag
gacatcctgtactccatcgtggacgaggagaccggcaaggactgtgccaaagtgaagacc
gtcttcctgaggctgcccgggaagaggggcttcgggccggccggctggacggtgcaggcc
aagatggagatctacctgtggctgggcctcaacaagcagtgcaaggacttcctgagtggc
ctgccctgcggctttgaggagaagaaagccagcaagggcctcggcctccaggccttccca
cccatcagcctcctctacacgaagaagcaggtgttccagctccgagcccacatgtaccag
gcccggagcttgttcgccgcagacagcagcggcctctccgacccctttgcccgggttttc
ttcatcacccagggccagtgcactgaggtgctcaacgagacgctgtgcccgacctgggac
cagctgctggtcttcgacaacgtggagctctacggagaggcccatgagatgcgggacgac
ccccccattatcgtcattgagatctacgaccaggacacggtgggcaaggcggacttcatg
ggccgcacctttgccaagccggtggtgaagatgtcggacgaggactacggccccccacgc
ttcccgccccagctggagtactaccagatctaccggggcaactccacggccggggacctg
ctggccgccttcgagctgctccagatcggcccggctggcaagtcggacctgcctccgatc
gatgggccgacagacacggagcagggtcccatcctgccggtgcccttggggatccgacct
gtgctgagtaaatacagagtggagatcctgttctggggcctgcgggacctgaagcgggtg
aacctggcccaggtggaccggccccgggtggacatcgagtgcgccggcaagggcgtccag
tcggccctgatccagaactacaagaaaaaccccaacttcagcaccctggttaagtggttt
gaagtggatctcccagagaacgagctgctccacccacccctgaacatccgggtggtggac
tgccgggcctttggccggtacacgctggtgggctcccacgccgtcagctccctgcggagg
ttcatccaccggcccccggacaagaaatcccagcactggaacactgcagctaaactgctc
aacggctatttggccctggcaaacagaggcccgtactatcgcctcccaggtgaaattgtc
atcagcatggaaccggaggtgcccatcaagaagatggagaccatggtgaagttggaggct
aactccgacgcggtggtgaaggttgacatgcagtcggaagaggagaaggagaagaagaag
aagaagaagaaaggagggggagaggagatagaggaagaggagccagacgaaagcatgctg
gattggtggtccaagtactttgcttccattgagactatgaaggagcaactccggcagcag
gaagcggctgcagcagaagctgaggagaaggaggaactggagattgcagagggctccaag
ggccaggcaaagaccaaggagaaggtcaaggcgcccaaagaggacaagaagaagaagcag
caacagccacctgaagctcctgagaagaagaacaaacagaagattgacgagctgaaggtc
tacaacaaagaactggaaatggagttcgacagcttcgaagactggctgcacacattcagc
cttttccgggggaagatcggggacaatgacgaaaccacgacggaggaagagcggatagtg
ggcaggttcaagggttccatgtgtgtttacaaagtgccgcttcccgacgacatcaccaag
gaggcaggatacgaccccaacttcggcatgttccagggcattccaaacaatgaccccatc
aatgtgctggtccgagtgtacatcgtgagggccaccgacctgcacccagccgacatcaac
gggaaagcggatccctatatcgccatcaggctgggcaagacagacatcaaagacaaggag
aactacatctccaagcagctgaaccccatctttgggaagtcgttcgacattgaggccacc
ttccccatggagtccatgctgacggtggccgtgtacgactgggacctggtgggttctgac
gacctgatcggggagaccaagatcgacctggagaaccgatactacagcaagcaccgggcc
acctgcggcatctcacagacctactccacccacggctacaacatgtggcgggaccccggg
aagcccacgcagatcctctccaagctgtgcaaagagggcaaggtggatgggccccactac
ggacctggagggcgggtgaaagtcgccaaccgggtcttcaccggccccagggagatggag
gatgaaaacggtcagaagaagcagacggacgagcacctggccctggcggtcctgcgccac
tgggaggagatcccccgggtgggctgcaagctcgtcccggagcacgtggagacgcggccg
ctgctgaatcccgacaagcccggcatcgagcagggccggctggagatgtgggtagacatg
ttccccatggatatgccggcacctggccctgccatcgatatctctcccaggaagccaaag
agatatgagcttagagtgatagtgtggaacacagatgaggtaatcctggaggacgatgat
ttcttcactggggagaaatccagtgacatttttgtcagggggtggctgaagggccagcaa
gaggacaagcaggacacggacgtgcattaccactcgctcaccggcgagggcaacttcaac
tggcgctacgtcttccccttcgactacctgatggcggaggagaagattgtcatctccaag
aaggagtccatgttctcctgggatgagactgagtacaagatcccggctcgcctcaccctg
caagtctgggacgccgaccacttctcggctgacgacttcctcggggccatcgagctggac
ctgaaccgcttcccgcgcggcgccaagacggccaagcagtgcagcatggacatggtgacg
aacgagggcgacctgcccctggtctccatcttcaagcagaagagggtgaagggctggtgg
cccttcgtggccaggaatgagaacgacgagctggagctcacgggcaaggtggaggccgag
ctgcacctgctgacagcggaggaggccgagaaatcccccgcggggctggcccgcaacgag
cccgacccgctggagaaacccaaccgccccgacaccagcttcatctggttcctgaacccc
ctgaagtccatccgttacttcatctggcacacgtaccgctggctcctcctgaaactcctc
ctcctcctcctcgcgctcctcctggtcggcctcttcctctactccatgccgggctacctg
gtcaagaagcttctgggggcctga
DBGET
integrated database retrieval system
