Chelonia mydas (green sea turtle): 102940396
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Entry
102940396 CDS
T02989
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmy03036
]
102940396 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cmy03400
]
102940396 (SMCHD1)
Chromosome and associated proteins [BR:
cmy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102940396 (SMCHD1)
DNA repair and recombination proteins [BR:
cmy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102940396 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
102940396
NCBI-ProteinID:
XP_037748719
LinkDB
All DBs
Position
2:82572372..82739995
Genome browser
AA seq
1990 aa
AA seq
DB search
MAAVAGGGTRAPEPSLSGPHGSGDRTVFLFDRRQEQGDPKEKVLSCDAETYRGFRSAVCQ
ALCISSEDNFVITTTNRKEITDDNFSEIVQEGVTLYLLQSVDQTLLSATKERIDFLPHYD
TLIKSGMYEYYASEGQNPLPFAFAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPPPVPRSLNSDISYFGVGGKQA
VFFIGQSARMISKPADSHDVHELFLSKEDFEKKEKNKEAIYSGYIRNRKPSDSAHITSDD
ERFLHNLIMEERDKKSFTAVVVTGVQPDHMQYLKNYFNLWTRQLAHIYHYYIHGPKGNET
NATMKEAGPFNNIDIEILMFEKGKVPKMVNLREIKDDMQTLYINSAADSFEFKSHVEGEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLKDDDDDDDCFVVEKGARGKRPIFECFWNGRLI
PYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTL
FTRVFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKEIITRTDLTSKRMQSPWATYS
AIEWDGKTYRTGQLVKTIKTLPIFYGSILKFFLYGDHDGDVYATGGEVQLALEPQALYDE
IKIIPISKLDRAMSEKVVKKYIEDEMARFPDRLSVTWPEGDELLPNETKLAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPVGNKEIISHISQHGGKWPYWFKKME
NIHKLGSYTLKLQVVLNESNADTYAGRPLPSKIFKFNVVEGKPEKFSVGHLDPPFRVGVP
FNIPLDLQDEFGHPTHLATDIKPILEASGLTLQYEEISKGTNCVIKGVTAKGHVNNYLGK
NFSLKVILPGLKEDSQIFKIRLLPGPPRQLKVKPDSEILKIENGTSFPFQVEVLDEAGNI
TAQPKLIVHCKFVGAPNLPVYAVDCSNAGTNILTGPVVHVQNIKKDQMLKARIEIPSCKD
VPPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGERE
IIITSALAEKIKVNWTPRINREQMIQGLLPDVKVPTSVKDVRYCLITFHDDHVSLESAFT
VRPLPDEPKHIKCKLKGPNTLQMGEELQSEIDVMVTDQYGNQIQTLSGSCINSLGISGNG
LDKSNLKTTWQESTQTMTVKGISFYPGPPGSKELCFAWREFSDFLRVNLTSGPPVKLHLM
DWPELEEPIAVINGRELQKPLIVQLCDQWENPSPEPNVKINLVKANNLKIISSSQQHKTD
ENGRANLGVISIHAPRGEHTLQLKASYNRNTLDCPIIKFNVLPDPEKPVCMNVKYDKNAS
FVAGSTFPDFMVSVISEDNNIIKNINPGRISMKMWEGQSSENRVPANVTTLGCSKVKDGK
DEGFFYFRDKMVPERVGTYSIQFAFAIDKTNILSSEQIIIEVVPNDPVQLLPESPPATPV
VSNVRTVASRTLIKDLWLHIKDEYNNSTGNNLVGKIIAVIKSSSEEDTEIPVFQGKVKTI
EFPFNRGSAEIVNLVLAENSPGRDSTEYILEFEADLPALAKPLEPYRLSFMFYNDFKKQQ
QMAMLTRKRDELSKSIAAYRNMFDTTEQLVTEMKYQVQEAETKQSHLKNELKKHQIDIPQ
TNILQYVDSLIKQKMLEQEGVKKSPRRSCTLSNYPKDNQDILGKIAHLAQIEDDKAAKVI
SWHMASDMDCVVTLTTAAARRIFDETQGRQQVLPLDSVYKKTLPDWNRTLPHLRNGRNHF
RPIGNPVFARDLLTFPENVEHCQIVFGMLLGDTIIIDDLDAANHYRKEVVKITHCPTLLT
REGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYRTLSGQIDLLQQYRTAVVKLHS
VNQDLHSQLQSLNTPDMQKTKQELAEQEKSLKLIEEKLGMTPSGKGTESLLPPEALEMSD
SPTPPKRMRR
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggtggcgggaggcggcactagggctccggagccgagcctgtcagggccgcac
ggcagcggggaccggaccgtgttcttgttcgaccggcgccaggagcagggggaccccaag
gagaaagtgctgagctgcgacgcggagacgtaccgcggcttccgcagcgctgtgtgccag
gcactctgcatttcttctgaagataactttgttatcacaacaaccaatagaaaagaaatt
acagatgacaacttcagtgaaattgttcaagaaggggttactttgtatttgctacagtca
gttgatcagacactactttcagcaacaaaggagcgaattgacttcctaccacactatgac
acgcttatcaaaagtggcatgtatgaatattatgctagtgaagggcaaaatcctttgcca
tttgcctttgctgagttgattgacaattctttgtcagctacttctcgtaatactgggatt
cgaagcatacagataaaattgttatttgatgactctcaaggaaaaccagctgttgctgtg
attgataatggaagagggatgacttctaagcagcttaacaactgggctgtgtatagatta
tcaaagtttacaagacaaggtgactttgaaagtgatcattcaggatatgtacgccctcct
ccagtgcctcgcagcttaaatagtgacatctcatattttggtgttggaggcaaacaagcc
gtgttcttcattgggcagtctgccagaatgataagcaaacctgcagattctcatgatgtc
catgagcttttcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tacagtggatacattagaaacagaaagccatctgactctgctcatatcaccagtgatgat
gaacgatttctacacaatctcataatggaagaaagggataagaagagtttcactgcggtt
gtcgttaccggtgtacaaccagatcacatgcaatacttgaaaaactattttaatctttgg
acaaggcaattggcacatatctatcattactacatccatggaccaaaaggaaatgaaact
aatgctacaatgaaagaagctggacctttcaacaacattgatattgagattttgatgttt
gaaaaaggaaaggtacctaagatggtcaaccttagagagatcaaagatgacatgcagaca
ttatatataaattctgcggcagatagctttgagtttaagtcacatgttgaaggagaaggt
atagtggagggcatcatccgctaccatcctttcttatatgataaagaaacatatcctgat
gatccatgctttccatcacgattaaaagatgacgacgatgatgatgactgctttgtggta
gaaaaaggggccaggggaaaaaggcctatttttgaatgcttttggaatggaaggttaata
ccatacacaagtgtagaagactttgactggtgtgctcctcccaagaagagaggacttgca
ccaattgaatgctacaatcgaatttctggtgcattatttaccaatgataagtttcaggtc
agcacaaacaagcttacttttatggacctggaactgaagttaaaagacaaaaacactctt
tttacaagggtcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttg
tggctcaaagactgccatgagaaatatgacaaacagataaaattcacactgtttaaagaa
ataattacacgtactgacttgacctccaaaagaatgcaaagtccttgggctacatattct
gcaatagagtgggatgggaaaacttacagaactggacagttggtgaaaacaattaaaact
cttccaatattttatggaagtatcctgaaattttttctatatggagatcatgatggggat
gtgtatgctacaggaggagaggttcaacttgctctcgaacctcaagcactgtatgatgaa
ataaaaattattccaatctcaaaacttgacagagcaatgtctgaaaaagttgttaaaaaa
tacattgaagatgaaatggcaagatttcctgataggttgtcagtaacatggcctgaagga
gatgagctgttaccaaatgagaccaagcttgctggtacaccaataggagcattaagaatt
gaaatattgaataagaaaggcgaggcaatgcaaaaacttccaggtacaagccatggaggg
tcaaagaaactgcttgttgaactaaaagttattttacactctcctgttgggaataaggaa
atcatttctcacattagtcaacatgggggtaaatggccttactggtttaaaaaaatggaa
aatattcacaaacttgggagctacacactgaaactacaagtggtgttgaatgaaagtaat
gcagacacctatgcaggaaggcctctaccatctaaaatatttaaatttaatgttgtagag
gggaaaccagaaaaattttcagtgggtcatttggatcctccatttcgagttggagtacct
tttaatattcctttggacttgcaggatgaatttggtcatcccacacatctggcaactgat
attaagccaattcttgaagccagtggtttgactttacagtatgaagaaataagtaaagga
acaaattgcgtcattaagggtgtcactgctaaaggccacgtaaacaattacctgggcaag
aatttcagtctgaaggttattcttcctggtttgaaagaagactcacagatcttcaaaata
agattactgcctggccctcctcgtcaactgaaagtgaaacctgattcggaaattctaaag
attgaaaatgggacatctttcccctttcaggttgaagtgttggatgaagcaggaaatata
acagcacaaccaaaactgatagttcattgtaagtttgtaggtgctccaaatcttcctgta
tatgccgtggattgcagtaacgctgggacaaatattttaactggaccagtggtgcatgta
cagaatataaagaaagaccagatgctcaaagcaaggattgaaatacctagttgtaaagat
gtgccaccagtggaaaagactattaagctgctccccagtagccatgttgcaagactgcag
atttttagtgtagaaggacaaaaggctattcaaatcaaacaccaggatgaaattaactgg
attgcaggggatgtcatgcacaaccttatctttcaaatgtatgatgaaggagaaagagag
atcatcataacttcagctctagctgaaaaaattaaggttaactggacacccaggattaac
agagagcaaatgattcagggactactgcctgatgttaaagtaccaacatctgtaaaagat
gtgcgttattgcctaattacattccatgatgaccatgtatctttggagagtgcatttaca
gtcagaccacttcctgatgagcctaaacacattaaatgcaaattaaaaggaccaaataca
ttacagatgggtgaagagctacaaagtgaaatcgatgtgatggttacagaccagtatggg
aatcagattcagacactctcaggctcttgcataaattccttaggaatttctgggaatggg
ctggataaatcaaatttgaaaactacttggcaggaaagtacacaaaccatgactgtcaaa
ggtattagcttttatccaggtcctcctggaagcaaagaattgtgttttgcttggcgtgaa
ttttctgattttctcagagtaaatttgacttcaggacctccagttaaactacaccttatg
gattggccagaattagaggagcctattgcagtaattaatggcagagaactgcagaagcct
ctgatagttcagctctgtgatcagtgggaaaatccatctcctgaaccaaatgtcaaaatc
aatcttgtgaaagctaacaacttaaagatcatttcttcaagccaacaacataaaacagat
gaaaatggtagggctaatctgggagtaattagtattcatgcacccaggggagagcataca
ttacagcttaaagcctcatacaacaggaacacattagattgccctataatcaagttcaat
gtcctgcctgaccctgagaaacctgtgtgtatgaatgttaagtatgacaaaaatgcttct
tttgtagcaggaagtaccttccctgattttatggttagtgtaatttctgaagataacaac
attattaaaaatattaatccaggacggatttctatgaaaatgtgggaaggacagagcagt
gaaaacagagtaccagcgaatgttacaactcttggctgtagtaaagtcaaggatggcaaa
gatgagggcttcttttacttcagggataaaatggttccagagagagtgggaacttacagc
atccagtttgcttttgcgattgataagacaaatatactcagcagtgaacagattataatt
gaagtggtacctaatgatccagtgcagttgctaccagaatctccaccagctactcctgta
gtttcgaatgttcgaactgttgccagccggactctgatcaaggatttatggctccatata
aaggatgaatacaacaacagtacaggaaataatttggttggcaagataatagctgtaatt
aagagttccagtgaagaagatacagagatcccagtctttcaggggaaagttaaaacaatt
gagtttccatttaacagaggatctgctgaaattgttaatctagtactggcagaaaacagc
cctggaagagatagcactgaatatattcttgaatttgaggcagacttaccagctttggca
aaacctctggaaccataccgtctatcatttatgttttacaatgattttaagaaacagcag
cagatggcaatgcttacaagaaagagagacgaactatctaagtcaatagctgcatacaga
aatatgtttgataccactgagcagcttgttactgaaatgaaatatcaggtccaggaagct
gaaacaaaacagtctcacctgaagaatgaattgaaaaagcatcaaattgatattccgcag
acaaacatattgcaatacgttgattctctcataaaacaaaagatgttggaacaggaagga
gtaaagaaatctccaagaagatcatgtaccctttcaaactatcccaaagacaatcaggat
attttaggaaagattgcacatttagcacagattgaggatgacaaagcagcgaaggtcatc
tcttggcatatggctagtgatatggactgtgtagtcaccctaactactgctgctgctcgt
cgtatctttgatgaaacccaaggtcgacagcaagtcttgcctcttgattctgtttacaag
aagactctcccggattggaacaggactctgcctcacttacgaaatggaagaaatcacttc
agacctattggaaaccctgtctttgccagggatttgttaacatttccagagaatgtagag
cattgtcagatagtgttcgggatgctcttaggtgacaccatcattattgacgatttggat
gctgccaatcattacagaaaggaggttgtaaaaatcacacattgcccaacattactgact
agggaaggagatagaattcgcagcaatggaaagtttggaggccttcaaaataaagctcct
ccgatggacaaactcagaggaatggtatttggagcaccaatgccaaaactttaccgaact
ctttctggacagatagatcttcttcagcaataccgtacagcagtggtcaaactgcatagt
gttaatcaggatcttcattcacagttacagtcccttaatactccagatatgcaaaagaca
aaacaggagcttgctgaacaagagaaaagtctcaagctaatagaggagaaactgggcatg
accccatcaggtaaaggcactgaatcattacttccaccagaagcacttgagatgtctgac
agtcccactcctcccaaaagaatgagaagataa
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integrated database retrieval system
