Caldicellulosiruptor naganoensis: OTJ99_001574
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Entry
OTJ99_001574 CDS
T08720
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnag
Caldicellulosiruptor naganoensis
Pathway
cnag03030
DNA replication
cnag03410
Base excision repair
cnag03420
Nucleotide excision repair
cnag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTJ99_001574 (ligA)
03410 Base excision repair
OTJ99_001574 (ligA)
03420 Nucleotide excision repair
OTJ99_001574 (ligA)
03430 Mismatch repair
OTJ99_001574 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnag03032
]
OTJ99_001574 (ligA)
03400 DNA repair and recombination proteins [BR:
cnag03400
]
OTJ99_001574 (ligA)
Enzymes [BR:
cnag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OTJ99_001574 (ligA)
DNA replication proteins [BR:
cnag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTJ99_001574 (ligA)
DNA repair and recombination proteins [BR:
cnag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OTJ99_001574 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTJ99_001574 (ligA)
MMR (mismatch excision repair)
DNA ligase
OTJ99_001574 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OTJ99_001574 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH
RUBY_RBDX
HHH_8
BRCT_2
RNA_ligase
Zn_ribbon_PADR1
SAM_EPH
MMS19_C
RNA_lig_T4_1
DUF719
Motif
Other DBs
NCBI-ProteinID:
WAM30791
UniProt:
A0ABY7BFB4
LinkDB
All DBs
Position
complement(1587494..1589515)
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIFPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFSEGELYDFDRRLKDLLGTDEFNYVVEYKIDGLS
VALEYENGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDINIVVRGEVFMPKDEFIK
LNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELKTHDEALQF
LKYLGFKVSPDYVVCNNIKEAYEAIKKIEEKRGMLPFEIDGAVVKLNQLALREVAGSTAK
SPRWAVAYKFPPERKETKLLDIEVNVGRTGILTPTAVLEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFERGLIKTPADIYDLKFDDLVNLD
RFGVRSTNNLLKAIEASKKRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEEL
LKLPDFGEKMAKSVVTFFRQEQTKHLIERLKRAGVNTVSEKKAKSDLLKGYTFVLTGALS
QYSRSQAKEILESLGARVSESVSKKTTAVIVGEDPGSKLTKAQELNVRILYEQDFEKLIS
AKSREEVEKILME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttcattaaaaagaggattcgagagcttgttgaccttattaattatcacgat
tataagtactatgttgaagacaatccagaaataagcgactatgaatatgatatgctctac
agagagcttgttgagcttgaaaaacagtatccagaatatatcttccctgactcacccaca
caaagggttggcggcaaggtaaaagaagggtttaaagaggttgtccacagagtaccgctt
ttatcactctcgaatgtgtttagtgaaggggaactttatgactttgacagaagactgaaa
gatcttcttggcactgatgaatttaattatgttgtcgagtataaaattgacgggctttct
gtggcgcttgaatatgaaaatggtctttttgtaagaggcgccacacgtggagatggtaat
gtaggtgaggatgttactgagaacttaaagacaattaggtcaattccattgagacttaaa
gaggatataaacatagttgtccgtggagaagtgttcatgccaaaagatgagtttataaaa
ctaaatcaagaaagggaagaaaatgaagagccgctttttgcaaacccgcgaaacgcggca
gcggggtcgcttcgccagcttgacccaaggataacagcacagagaaagcttgatatattt
gttttcaatgttcagtggtgtgaaaaagaactcaaaacccacgatgaggcgctacagttt
ctgaagtatctgggatttaaagtttctcctgattatgttgtttgcaataacataaaagag
gcatatgaagcaatcaaaaagatagaagaaaaaagaggcatgcttcctttcgagatagat
ggtgctgttgtgaaactaaatcaattagctttgcgtgaggtggcaggttcaactgcaaag
tcaccaagatgggcagttgcttataaattcccaccagagagaaaggaaacaaagcttttg
gacattgaagtaaatgttgggagaacaggtattcttactccaactgcagtacttgaacct
gtaagaatttcaggttcggttgtgtcacgtgcaacacttcataatatggactatataagg
cagaaggatattagaattggtgacacagtaatagttcaaaaagcggccgaaataatacca
gaggttgttgaggttgtgttttcaaagcgtacaggaaatgaaaggatttttgagatgccg
aaaaaatgtcctgtgtgcggagcagatgttataaagtttgaagatgaggttgcatacaga
tgtacaggtgttgaatgtcctgcaaagagctacaggttaattttgcactttgtatcgcgt
gatgcaatggacattgcaggcatgggtgagatgatagtaaaaaatctatttgaaagaggt
ttaattaaaacacctgcagatatctatgatttgaaattcgacgatttggtaaaccttgat
agatttggcgtcagatctactaataatttattaaaagcgatagaagcatctaaaaaacga
cctcttgataggctaatatatgcgcttggcatacgacatattgggcaaaaggcggcaaaa
acgttggcagagcacatatcctcaattgatgacctttttacaattactgaagaagagctt
cttaagctccctgactttggtgagaagatggcaaaaagcgttgtaacctttttccgacaa
gaacagacaaaacatctaattgaaagactcaaaagagcaggggttaatacagtctctgag
aaaaaggcaaagtcagacctcttaaaaggatatacatttgtgctaacaggtgctctttca
caatattcaagaagccaggcaaaggagattttagagtctttgggtgcaagagtgagcgaa
agcgtctctaaaaagactactgctgtaattgttggtgaagaccctggcagcaaacttacg
aaagcccaagagctaaatgtaaggattttgtatgagcaagattttgagaagttaatttct
gcaaagtcacgcgaagaggttgaaaagattttaatggagtga
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