Cupriavidus necator N-1: CNE_1c19980
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Entry
CNE_1c19980 CDS
T01564
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnc
Cupriavidus necator N-1
Pathway
cnc03030
DNA replication
cnc03410
Base excision repair
cnc03420
Nucleotide excision repair
cnc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNE_1c19980 (ligA)
03410 Base excision repair
CNE_1c19980 (ligA)
03420 Nucleotide excision repair
CNE_1c19980 (ligA)
03430 Mismatch repair
CNE_1c19980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnc03032
]
CNE_1c19980 (ligA)
03400 DNA repair and recombination proteins [BR:
cnc03400
]
CNE_1c19980 (ligA)
Enzymes [BR:
cnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNE_1c19980 (ligA)
DNA replication proteins [BR:
cnc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNE_1c19980 (ligA)
DNA repair and recombination proteins [BR:
cnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNE_1c19980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNE_1c19980 (ligA)
MMR (mismatch excision repair)
DNA ligase
CNE_1c19980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNE_1c19980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AEI77338
UniProt:
G0EYF0
LinkDB
All DBs
Position
1:complement(2064674..2066803)
Genome browser
AA seq
709 aa
AA seq
DB search
MTATHRGAQADASAPAGPLPAEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFS
ELQALELEHPELQTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQ
GLGRTAPAAGEQDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTV
NVRTIKAIPLKLRGQAPAVLEVRGEVFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLR
QLDPRITAKRPLSFFAYGLGELQGVDRPPTHSVMLDGFAALGLPVCKDRAVVKGAQGLLD
FYRDIGQRRDVLPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVV
GVVTERRPADARAFVMPTACPVCGSHIEKLEDEAIARCTGGLICAAQRKQALLHFAQRRA
MDIEGLGDKLVEQLVDQGIVRTPADLFKLGVAKLAALERMADKSAANLVVAIDASRETTM
NRFIFALGIRHVGEATAKDLARHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPH
NVEVIEQLRAAGVHWAESEPVAKAPAPLSGKTFVLTGTLPTMSREDAKELLEAAGAKVAG
SVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGMLALLAEAGAAPAQE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaacacaccgcggcgcgcaggcagatgcctccgcgcccgccggccccttgccg
gccgaagctgccgccaagcgcgtggcctggctgcgcgacgagctggatcgccacaactac
cagtactacgtgctggacgcgccgaccattcccgacgccgagtacgacgcgctgttcagc
gagttgcaggcgctggagcttgagcatcccgaactgcagacgccggactcgcccacccag
cgcgtgggcggcgagccgctgtcggccttcgactcggtgcgccaccgcgtgccgatgctg
tcgctcaacaacggcttcgccgacgacgacgtgctgaacttcgaccgccgctgcgcgcag
ggcctgggccgcaccgcgcccgccgccggcgagcaggacctgttcagcgcggccgacgcg
gtcgagtacgcctgcgagctgaagttcgacggcctggccatgtcgctgcgctatgaggac
ggccgcctggtgcaggccgccacccgcggcgacggagagaccggcgaagatgtcacggtc
aacgtgcgcaccataaaggcgattccgctgaagctgcgcggccaggctcccgccgtgctt
gaagtgcggggcgaagtcttcatgtaccgcggcgacttcgacaagctcaacgaacgccag
gccgaggccggcgagaagaccttcgtcaacccgcgcaacgccgccgcgggcagcctgcgc
cagctcgatccgcgcatcaccgccaagcggccgctgtcgttcttcgcctacggcctgggc
gagctgcagggcgtggaccgtccgcccacccacagcgtgatgctcgacggctttgccgcg
ctgggcctgccggtgtgcaaggaccgcgcggtggtgaagggcgcgcagggcctgctggat
ttctaccgcgatatcggccagcgccgcgacgtgctgccgtatgacatcgacggtgtggtc
tacaaggtcaacgcactggccgagcaggagcgcctgggctttgtctcgcgcgcgccgcgc
tttgcgctggcgcacaagttcccggcgcaggagatgaccaccatcgtcgaggacatcgaa
gtgcaggtcggccgcaccggcgcaatcacgccggtggcgcggctcaagccggtgtttgtc
ggcggagtcacggtgaccaacgccacgctgcacaacgaggacgagatccgccgcaaggac
gtgcatatcggcgacaccgtgatcgtgcgccgcgccggcgacgtgatcccggaagtggtc
ggcgtggtgaccgagcgccgcccggctgacgcgcgcgccttcgtgatgccgaccgcctgt
ccggtgtgcggctcgcatatcgagaagctcgaggacgaagccatcgcgcgctgcaccggc
ggcctgatctgcgcagcgcagcgcaagcaggcgctgctgcatttcgcgcagcggcgcgcc
atggatatcgaaggtctgggcgacaaactggtcgagcaactggtcgaccagggcatcgtg
cgcacgccggcggatctgttcaagctgggcgtggccaagctggccgcgctggagcgcatg
gccgacaagtcggcggccaatctggtggtggcgatcgacgcgtcgcgcgagaccaccatg
aaccgctttatcttcgcgctgggcatccgtcatgtgggcgaagccaccgccaaggacctg
gcccggcacttcggcaagctcgatgcgctgatggcagccgacgaagcggctctgctggaa
gtgaacgacgtcggcccggtggtggcgcagtcgatcgcgcacttctttgccgagccgcac
aacgtcgaggtcatcgaacaactgcgcgccgcaggcgtacactgggcggaaagcgagccg
gtggccaaggccccggcgccgctgtcgggcaagaccttcgtgctgaccggcacgctgccc
accatgtcgcgcgaggacgccaaggaactgctggaagccgccggcgccaaggtggcgggt
tcggtatcgaagaagaccgactacgtggtcgcgggcgccgaggcaggcagcaagctcgac
aaggccgaggcgctgggcgtgccggtgctggacgaggccggcatgctggcgctgctggca
gaggccggcgccgcgccggcacaggaataa
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