Cryptococcus neoformans var. grubii H99: CNAG_00081
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Entry
CNAG_00081 CDS
T08175
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNAG_00081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cng03041
]
CNAG_00081
Spliceosome [BR:
cng03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CNAG_00081
Complex C
U5 SnRNP specific factors
CNAG_00081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
TPR_19
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_6
TPR_21
ANAPC3
FAT
ARM_TT21
ARM_TT21_N
ARM_TT21_2nd
TPR_12
Cdc6_lid
Motif
Other DBs
NCBI-GeneID:
23883949
NCBI-ProteinID:
XP_012046512
UniProt:
J9VDV4
LinkDB
All DBs
Position
1:complement(227600..230987)
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AA seq
942 aa
AA seq
DB search
MSNVGTVKHIPKEVRYNFLSMAAPASYVAGLGRGASGFTTRSDIGPARAGPSAEVVAEAQ
ARRGEEEIPDPDAFQDPDDERNLFAGTVYEADDEEADKVWDSVDARMDARRKARRDAAEA
KAAAEERARNPKLQTQFADLKRSLSSLNDADWDAIPEAGNLTGKRRKANLRLEENQNGRS
YNVSDTVIADAVKRNAMVGELDPAEAGIGIDGTETDLVSIGNARDRVLSLQLDQATRDAS
NGSSTSIDPKGYMTALNSQIVQTDAQIGDIKQARQLLQNLIQSNPKHAPGWIAAASLEVH
AKKMVAARKIIAEGCEKCPKNEDVWFHAAELNTPENAKVILGRAIQHVPQSVKIWLKAAS
LETDINAKKRVLRKALEFVPNSVGLWKETVNLEDDPEDARVLLTRAVEVIPNSVELWLTL
ARLETPENAKQVLNSARKRIPTSHEIWIAAGRLAEQSPSAVAVKPEVKMEDEAEYEAEQR
KKLAQQVNKLMAGAVNSLRKNQVILSREQWLQEAEKCEQDGSPLTAQAIVKATIAQDVEE
EDRRSVWIEDAERATKGGFYEVARACYAATLEAFPTTPSVWRKAAEFEKVHGTPDAVQEI
LAQGSQHCPHAEVLWLMAAKEKWVGGDIPGAQAILAEAFKQNEDSESIFLAAAKLAAETG
EMEAAIQILEKAKAQADTERVWMKSAVLLRQLGKLDEALSTLEVAIKRFASFDKLHMIRG
QIYESRNEVALARNAYAQGCRSCPKSIPLWILSARLEEKAGVTIKARALLEKARLHNPKN
DELWAESIKIEERTGSPQQAKSVLARAMQECPASPLLWSMAIFMEAPQQRKGRSVDAIKK
AGEHPAVILAVARNFWSERKIEKTRQWMANAITADEDWGDAWGYWLKFERQHGEKERQEA
VIEKCIVASPHHGPVWQSVSKDLANVGKSTKEILELVADKLE
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgtaggcacagtgaagcacatcccaaaggaagtgcgatacaacttcctcagc
atggccgctccggcgagctatgttgctggtctcggtcgaggtgcttctggtttcacaact
cggtccgatattggtcccgcccgagctggtcccagtgcagaagttgttgcagaagctcaa
gctcgccgtggtgaagaagaaatccctgatccagatgctttccaagatccggatgacgaa
aggaatttgtttgctggtacagtctacgaagcggatgacgaagaagccgacaaggtgtgg
gacagtgttgatgccagaatggatgcgagaagaaaggccagacgagatgcggcagaagcg
aaagcggcggctgaagaacgcgctcgcaatcccaagcttcaaacacaatttgcagacttg
aaacgatccctctcgagtctcaacgatgcagactgggatgccatccctgaagcaggaaac
ttgactggaaaaaggaggaaggccaacttgagattggaggaaaatcagaatggaagaagc
tacaatgtcagcgacaccgtcattgcggatgctgtgaagagaaatgccatggtaggagag
ttggatcctgcagaggctggtatcggtatcgatggtaccgaaacagatcttgtatctatc
ggtaatgccagagaccgagtattatccctgcagcttgaccaagctacaagagatgcctca
aacggctcttctaccagcatcgaccctaagggctatatgaccgctcttaacagtcagatt
gttcaaacggacgctcaaatcggtgatattaagcaagctcgccagctcttgcaaaacctc
attcagtctaatcccaaacacgccccagggtggatcgccgccgcttccttggaagtacac
gctaagaagatggtcgctgccaggaagattatcgctgaaggatgtgagaagtgtccgaaa
aacgaggatgtttggttccatgccgcggaactcaacacaccggagaacgcgaaagttatc
ttgggtcgagctatacagcacgttcctcaatctgtcaaaatttggctcaaggctgcttct
ctagaaacagacataaatgccaagaagcgcgttctccgaaaagcccttgaattcgttcct
aactcagtggggttgtggaaagagactgtcaacctcgaagacgatcctgaagacgcccgc
gttctccttacccgtgctgtcgaagtcatccccaactctgtggagctctggctcactttg
gcccgtcttgaaacacctgagaacgccaagcaggtactcaattctgcgcgcaagcgtatc
cctacctctcacgaaatttggatcgctgccggtaggcttgctgaacagtcaccttccgct
gtggctgtcaagccagaggtcaagatggaggatgaagcagagtacgaggcagagcaaagg
aagaagcttgctcagcaggtcaacaaactcatggctggtgctgtcaattcattgcgcaag
aaccaggtcattctttcgcgagaacagtggttgcaagaggccgagaaatgcgaacaggac
ggttcacctcttacagcacaagctattgtgaaggcaactatcgctcaggacgtcgaagaa
gaagacaggcgatctgtttggattgaagatgcggagagagcaacaaagggtggattctac
gaggtcgcgagggcttgttacgctgccactctcgaggcttttcctactactccatcagtc
tggaggaaagctgcggagttcgaaaaggttcacggcacacccgacgctgtccaagaaatt
ctcgcccagggatcccaacattgtccccatgcggaggtcctctggcttatggccgcgaaa
gagaagtgggtcggcggcgatatccccggtgctcaagccatccttgccgaagctttcaag
caaaatgaagattccgaatctatcttccttgctgcggccaagctagcagccgaaaccggg
gagatggaggctgctatccagatccttgagaaggccaaggcgcaggcagacacagagagg
gtctggatgaagtcagcggtactgttgaggcagttgggcaagttggacgaggctctttca
actttggaggttgctatcaagaggttcgcttccttcgacaagttgcacatgatccgaggg
cagatctacgagtcccgtaatgaggttgcgcttgcgcgaaatgcatatgctcaaggatgc
cgatcatgtccgaagagtatcccattatggatcttatcggcccggctggaggagaaggca
ggtgtgacgatcaaggcaagggcactgctcgaaaaggcgaggttgcataatcccaagaat
gatgaattatgggcggaaagtatcaagattgaggagcgaacgggcagccctcaacaagca
aaatctgtccttgctcgagcaatgcaagaatgccccgcctctccacttctttggtccatg
gccatcttcatggaggctcctcaacagcgaaaaggtcgttccgtcgacgccatcaaaaag
gccggcgagcatccagccgtcattttggcggtcgcgaggaacttctggagtgaaaggaag
attgaaaagacgagacaatggatggccaatgctattaccgccgatgaagactggggagat
gcttggggttattggctgaagtttgaaaggcagcatggagagaaagaacgtcaagaagcg
gtcattgagaagtgcatcgtggcgtcaccacaccatggtccggtgtggcagtcggtatca
aaggatttggccaatgttggcaagtctacaaaagagatactagagttggtcgcggacaaa
ctggaataa
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