Cryptococcus neoformans var. grubii H99: CNAG_00665
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Entry
CNAG_00665 CDS
T08175
Name
(RefSeq) DNA topoisomerase 2-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNAG_00665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cng03019
]
CNAG_00665
Messenger RNA biogenesis [BR:
cng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNAG_00665
mRNA degradation factors
5'-3' decay
Decapping complex
CNAG_00665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
23884447
NCBI-ProteinID:
XP_012046873
UniProt:
J9VJK2
LinkDB
All DBs
Position
1
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AA seq
838 aa
AA seq
DB search
MSGGFFGFDTALPEHRQPQNRPNDAANTSKFQSASSLPNPFNLEAPEDEEMEVYTWGQGL
DKDVELEDELNDATFGVDINAIRGGQFSLGNEDSFSSPAKPSKQPQSQRGPIASTASRYR
PKVAADPFAFSEDDFYASRPVKKTQPKPKTKASVEPVWTKPAGQATSWGAAPSSTVKPSI
GSNHAQVEAPGHIKTLEEIEAEFASMPAPSAAQVAFQAPAQLSGPPPANAVVTLEELERQ
MMEEVPQPLVQPQAQQQVIPREVTPTQISGLAQSGYASQKAVLDSMFPDLGKSPAPVPTG
QQQGPTGQSPAPIGPSHEELARQEHFQKVFEAKVQAMSKYNNLMGSSDKDFITRIQLSQL
ATSDPYISDFYAQVFSAMERSRRAHESGQMDRPTVVQIAAGFGFGVGGPAGNRFGKMGQN
TMQKLSTQVKKLVESRTAHQKSTNTAALQGALGRVTRGGAAAPRPVLAIPTNTKLENRPA
SHLNQSTGIQRPPLTRKQIMYALEDLYTDVLELEQFRREAPPSASVDDIEIWNAKCQVKV
DQIWTKLMVQEPIEVSDPHPFISLLNPPKGQRILGRIILQLPDQKIYTLLSLLVVKFHQL
DVVARAPPPPITDVSLLTKADRLDRAKREADTDGFLYNLVPAMDMAINKCKLGLLGGLLV
AAVQRLDVVKIASTRPGVVLFTALLSKAQSLIRAPPPDPVNFHSGTHPDQIELEHFPRQF
SVFLDALLPSLPDLFPSSIAAKHAFGPSAYLMSGEKLPEKEGIEMERREAEVWGLAAALA
VNSAEEEQTALVAALREKILHTVQSARNPMVSPVRAEMKLRNVNVFLNGLGLDAAMIE
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcggattcttcggcttcgataccgcactccccgaacaccgccaaccccaaaac
cgtcccaatgacgcagccaacacttccaaattccaaagcgccagttctctgcctaatccc
ttcaacctagaggccccagaggacgaggaaatggaagtatacacttggggtcaagggcta
gacaaggatgtcgagctagaggatgagctgaacgatgcaacttttggcgtggacatcaat
gcaatcaggggtggacaattctccttggggaatgaagactcattttcttccccggctaag
ccttcaaagcagccccagtcgcaaagaggacccatcgcttcgaccgcctcccggtatcga
cctaaagtcgcggccgatccgtttgccttttctgaagatgacttttatgcttctcgccct
gtcaagaagactcaaccgaagcccaagacaaaagcgtcagttgagcctgtttggacaaag
ccagctggccaggcaactagctggggagcggctccatcctctacagtaaagccatctatt
gggtccaaccatgctcaggtggaagctcctggacatatcaagaccctcgaggagattgaa
gcagagtttgcgtcaatgcctgcccccagcgcggcgcaggttgccttccaggctcctgct
caattgtcaggaccgcctcctgcgaatgctgttgtgacacttgaagagcttgagcggcaa
atgatggaagaagtccctcaaccccttgtccaacctcaggcccagcaacaggtgattcct
cgagaggttactcccactcagatttcaggtctcgcccagtcgggatatgcttctcaaaag
gctgtcctcgacagtatgtttcctgatcttggcaaaagtcctgcacccgtacctacaggt
cagcagcaaggcccgacagggcaaagccctgcccctataggtcctagtcacgaagagctc
gctcggcaggaacatttccagaaggttttcgaagcgaaagtccaagcaatgtccaagtac
aataaccttatgggatcatctgacaaggactttatcacccgcattcaactgtctcaactc
gctacgtctgacccttatatttccgatttttacgcccaagtcttttctgcgatggagaga
agccgccgggcccatgagagtggtcaaatggacaggccgactgtggtacaaattgcagca
ggttttggcttcggcgttggtggtccggccggcaacagatttggaaagatgggacaaaat
actatgcagaaattgtcgacacaggtaaaaaaattggttgagagtagaacagcgcaccag
aaatcaaccaataccgctgctcttcaaggcgctctcggccgagtcacacgaggtggtgct
gctgcccctcgtcccgttcttgccatccctacaaacaccaagctcgaaaaccgtcccgcg
tctcaccttaatcagtctacgggcatacaacgtccccctcttactcgtaaacaaatcatg
tatgccctagaagatctctacaccgacgtccttgagcttgagcagttccgtagagaagcg
ccgccttcagcttctgtggacgacatcgaaatttggaacgctaaatgtcaagtaaaggta
gatcagatctggacaaagcttatggttcaagaacctatcgaagtatcggatccccatcca
ttcatatcccttctcaaccctccaaaaggtcaacgtatcctcggccggatcatccttcaa
cttcctgatcagaagatttacaccttgctgtcccttcttgttgtcaaattccatcaacta
gacgttgtggctcgtgctccccctcctccaatcacagacgtcagtctattaaccaaggct
gatagattagaccgcgcgaagcgcgaggcggacacggacggcttcttgtataacttggtg
cctgctatggacatggcgattaacaagtgtaagctggggcttttaggtggcctgttggtt
gctgctgtgcaaagattggatgttgtgaagattgcctctaccagacctggggttgtcctg
ttcacagcactcttatcaaaagctcagtctcttatccgcgctccccctcctgatcctgtc
aatttccattccggcacccatcctgaccagatagagcttgagcacttccctcgtcagttc
tcggtgttccttgatgctcttttaccttctttgccagatcttttcccatcatctatcgcg
gccaagcatgcctttggtccttctgcgtacttgatgtccggagagaagcttcccgaaaag
gagggcatagagatggagaggcgagaagccgaagtctggggtctagctgccgctttggcc
gtcaattcagcggaagaggagcagacagcattggttgctgctttgagggagaaaattctt
catactgtccagagtgccagaaaccctatggttagccctgtcagagcggaaatgaaactg
agaaatgtgaatgtgttcttgaacggtctcggtttggatgcggcaatgattgaataa
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