Cryptococcus neoformans var. grubii H99: CNAG_00960
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Entry
CNAG_00960 CDS
T08175
Name
(RefSeq) ATP-dependent RNA helicase DHX8/PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNAG_00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cng03041
]
CNAG_00960
Enzymes [BR:
cng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNAG_00960
Spliceosome [BR:
cng03041
]
Complex C
Other components
Step II factors
CNAG_00960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_30
EDC4_C
AAA_19
nSTAND3
AAA_16
T2SSE
SLFN-g3_helicase
Cas3-like_C_2
OB_RRP5_4th
TsaE
Motif
Other DBs
NCBI-GeneID:
23884709
NCBI-ProteinID:
XP_012049213
UniProt:
J9VP24
LinkDB
All DBs
Position
5:1555262..1559982
Genome browser
AA seq
1187 aa
AA seq
DB search
MMSTDKELYKLELLSLVSKVSQELFNHTKLQDKKLAEFVIALHEQSKTTEAFQKKLNEIG
ADFPEWFVKNLDRLIVTMHPKYKRKAAKMKASGQSRKSGDGQSIMDEQKQLQARKFPGLS
MPDQDWKPAEKYVDERATKEPHETLPESLSTSDTMAQLESIASRRNRPAAEDFLDGEPAA
KKMRSTSGHDGSSGRRGGYEAGGFRDSFRHGRPTVDERPVLYKIYNGTVANITDFGAFVT
LDGVERRVDGNQRSNEGLVHVSNITNGRVNSPRDFLKRGQRVKVKVMAVSPKIGLSMKDV
DQNTGDDLSPHLTVKTAEEAAAQQQRMSSYAASGSNSTPLLAVDERQRSSAKRLSSPERF
EIKQLIASGAVSAADYPDLDEDFSTNVANHEIEEDIDVEVNEVEPAFLSGQTKVTLELSP
VKIIKAPDGSLNRSALAGASLAKERRDLKRLEANEQADAETREINQPWLDPMANQSERQF
ASDIKGNLLGQKAAQMPAWKAANKVVSYGKITSMSIQEQRRSLPIYKLREQLVAAVRDNQ
ILVVVGDTGSGKTTQMAQYLAEEGFLEKGRLGCTQPRKVAAVSVAKRVAEEVGCRLGSEV
GYTIRFEDMTSPETKIKYMTDGMLLRELLVDPDCSKYSVIMLDEAHERTIATDVLFGLLK
KACKRRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRTYPVETLYTKEPEPDYLEASLI
TILQIHLMEPAGDVLLFLTGQEEIDTACEVLYERVKALGPQVPELLILPVYAALPSEMQS
RIFEPAPPGARKVVIATNIAETSITIDGIYYVIDPGFAKQNAYDPKLGMDSLIVTPISQA
QARQRAGRAGRTGPGKCYRLYTEVAYRNEMLPNPIPEIQRTNLASTILTLKAMGINDLIS
FDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKMADFPLDPPLSKMLIKSVDYGCS
EEALTIVAMLQAGGQVYYRPKDKQTQADAKKAKFHQPEGDLLTLLAVYNGWKNSKFSNPW
CFENFIQTRAMKTAQDVRKQLIGIMDRYKHDLVSCGTNYNRVRMAICSGFFRNAAKKDPT
EGYKTLVEGTPVSIHPSSALFQRPPEWCVYYELVLTAKEYMHQVTVIEPKWLSEVAPTFF
RIADQNKISKRKASEKIEPLFDRFAADKDDWRLSKQKKAARSSQTFG
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccaccgataaagagctgtataagctcgagcttctctcgcttgtatcgaaggtt
tcgcaagaactcttcaatcacactaagcttcaagacaaaaaattagccgaatttgtgata
gcacttcacgaacaaagtaaaacaactgaagcattccagaagaagctcaatgagatcggc
gcagactttcccgaatggtttgtcaagaatctcgacagattaatcgttaccatgcacccc
aagtataagaggaaagcggccaagatgaaagcctcggggcagtcacgaaagtctggcgat
gggcaatctatcatggatgagcagaagcaacttcaggcgagaaagtttccggggttgtcc
atgcccgaccaagactggaagcctgcggagaaatatgtcgacgaaagggccacaaaagaa
ccacacgagacccttccggaatcactttcgaccagtgataccatggcccagttagagtcg
atcgcgtctcgccgaaatagaccggcggctgaggatttcttggacggagagcctgctgcg
aagaaaatgcggagtaccagcggtcatgacggatcgtcaggacgacgaggggggtatgaa
gcaggcggctttagagactcttttaggcatgggcgtccgactgttgatgagaggcccgta
ctctacaagatctacaatggcactgtcgcgaatataacggattttggggcttttgtgact
ttagatggcgtcgaaaggagagtcgatggtaatcaaaggtcgaatgaaggcttggtccat
gtgtcgaatattacaaatggaagggttaactctccgagggacttccttaaacgaggtcaa
cgagtcaaagtcaaagttatggctgtcagtcctaagattggtctaagtatgaaggatgtc
gatcagaacactggtgatgatctttccccacatctcactgtcaagactgctgaagaggcc
gcggcgcagcagcaaagaatgtcatcttatgcagctagtggaagtaacagcacccccctc
ttagcagttgatgagcggcagcggtcgagtgcaaagaggttgtcaagtcccgagcggttc
gagattaagcagctcatagccagtggggccgtatctgcagcagattaccctgatcttgat
gaagacttcagcaccaacgtcgccaatcatgagattgaagaagacattgatgtcgaagtt
aatgaggtcgagccggcgttcttatcgggccagaccaaagtcaccttggaactctctcct
gttaaaatcatcaaagcaccagacggctcacttaaccgttctgctttagcaggcgcttca
ttagcgaaagaaagacgtgatctcaaacgtttggaagcgaatgagcaggccgacgcagag
accagagagatcaatcagccctggcttgatcccatggctaaccaaagcgagcggcagttt
gcgtcagacatcaaaggaaacctgcttggtcaaaaggccgctcaaatgcctgcttggaaa
gccgcaaataaagtcgtgtcgtacggcaagatcacttcaatgagtatacaagaacaaaga
cgcagtttgcccatctacaaattaagggaacagttggttgccgctgttcgggacaatcaa
attcttgttgtggttggagatactgggtctgggaagactactcaaatggctcaatacctt
gctgaagagggattcctcgaaaaaggacgtttgggatgcactcaaccgcgaaaggttgct
gctgtttctgttgctaagcgtgttgcagaggaagtgggttgtcgactcgggtctgaagtc
ggctacactatccgttttgaagatatgaccagtcctgagactaagatcaagtacatgacc
gatggtatgctccttcgtgaattgctggttgatccggattgttcgaaatactctgtgatt
atgcttgatgaagcacacgagcgcacaatcgcaactgatgtcctcttcggtctcctgaaa
aaggcttgcaagcgacgcccagatcttaagctgatatgtacttctgccacattggatgct
gccaagtttgcgacgtacttctggggttgcccaatctttactattcctggccgaacatac
cccgtcgagacactttatacaaaggaacctgagcccgactacctcgaggcctctctcatc
accatccttcaaatacatctcatggaaccggcgggtgatgttcttcttttccttacaggt
caagaggagattgatacagcctgtgaggttctatatgaacgggttaaggcactgggtcct
caagttccagagctcctcattttaccggtgtatgctgcgcttccctctgaaatgcagtca
cgcatctttgagccagcccctccaggtgcacgtaaggtagtcatcgcaaccaacattgca
gagaccagtattaccattgatggcatatactatgtcattgatcctggttttgcaaagcag
aatgcttatgacccaaagcttggtatggattctttgatagtcactccgatctcccaggcg
caagcacgtcagagggctgggcgtgctggccgcacaggccctggcaaatgctatcgtctt
tacacagaggttgcctaccgcaatgaaatgttacccaaccctatccctgaaatccaacgt
accaatcttgcatctactatcctcactctgaaagcaatgggaatcaacgaccttattagt
ttcgatttcatggatcctcctccagcagcaaccatgttaacagctttagaacaactttat
gctcttggtgctttggatgatgaaggactgttgaccaggattggtcgaaaaatggcagat
tttcctctagaccctcctttatccaagatgcttatcaaatctgttgattatggatgctct
gaagaagccttgacaattgtggctatgctgcaagctggggggcaagtgtattatcgacct
aaggacaagcagactcaagcggacgccaaaaaggctaagttccatcagccagaaggtgac
cttctcacattacttgctgtgtataatggatggaagaactcgaaatttagtaatccatgg
tgcttcgagaactttattcaaacacgagccatgaaaacagcgcaagatgtaaggaaacag
ttgattggaatcatggacagatataaacatgatcttgtgtcatgtggtactaactacaac
cgagtacggatggctatttgctccggattcttcagaaatgctgccaagaaggaccccact
gaaggttataagacacttgttgagggtacacctgtcagcatccacccctcaagtgccttg
ttccagcgaccccctgaatggtgtgtgtattatgaactggttcttacagccaaggagtac
atgcaccaggtcactgttattgaaccaaaatggctctctgaggtggcacctacgttcttc
cgtatcgctgatcaaaacaagattagcaagcgtaaggcatctgagaagattgagcctctg
ttcgatcgttttgctgcagataaagatgactggcgcctcagcaaacagaagaaagcagct
cgctcttcacagacttttggttga
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integrated database retrieval system
