Cryptococcus neoformans var. grubii H99: CNAG_01826
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Entry
CNAG_01826 CDS
T08175
Name
(RefSeq) transcription initiation factor TFIIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03022
Basal transcription factors
cng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNAG_01826
09124 Replication and repair
03420 Nucleotide excision repair
CNAG_01826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cng03021
]
CNAG_01826
03400 DNA repair and recombination proteins [BR:
cng03400
]
CNAG_01826
Transcription machinery [BR:
cng03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNAG_01826
DNA repair and recombination proteins [BR:
cng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNAG_01826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
GlfT2_domain3
Motif
Other DBs
NCBI-GeneID:
23885500
NCBI-ProteinID:
XP_012052465
UniProt:
J9VUA3
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All DBs
Position
11:complement(1018228..1021119)
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AA seq
644 aa
AA seq
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MTGESSAIHKYDVDFKKTPGTLSITSTHMVWVPKVKDAMDRQSQAMNRAINMLASKPGNE
RVSLKILFKENVPAGGLHFVFTNANTREDDRKAVQDVLIPFVAENKNSNASAPGTPGSAT
TPNTPSAATGAAMSDVAKGKRRINEVTPAGLSAVSAESSPLPPAVRSQRRKYNTLRQRVL
EKNDALRMLHRDLVLGRQITEEEFWEGREALIQAEEMAYAQKPGRPSRLLDDRFDLDAGR
RGKTTGGTGVGIKQADNGPVILKLSKELTREIFEEFPVVQDAYAKYVPGINETEFWSRYF
TSQLWERHRASVRKSANDEISRKKDDIFDQYLEEPDWNLQPRQPMPDRDGVERYLDLAAT
EEDHGEATSIRDVTMQAGRERSALPLIRRFNDHSKKLLRAASAGQTVRNSAFGGDIDIYE
EINLEDLHDPSTTPAIILDVENAAVLHEGDDKLAPTGVLPGYSDSELLAMATESASSLRD
SVPDFSSVCLANPGPFIDNDETQRNPAYEAFAKQRDSQAAALATVKDMWSRANAENAVLP
VFPEMLFEQIRSCHNSATEFLRQYWSAILPPVPGALGGQAPSAKDAKAAKMASYLKNTSN
KIEAIVQTAQITGFDPERVRKALAPTLGAVEVALERERKRVKGR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcgaatcctcagcaatacataagtacgacgttgacttcaagaagacaccggga
accctcagtattacgtcaacccatatggtatgggttccaaaggttaaggatgctatggat
cgtcaaagtcaggccatgaatagggctatcaatatgttagcaagtaaacctggaaacgag
cgcgtcagtctcaaaatactcttcaaagaaaacgttcccgcaggaggtcttcatttcgtt
ttcaccaatgccaacaccagagaagatgacagaaaagctgtgcaagatgttctcatacca
tttgtcgctgaaaacaagaattctaatgcatcagccccgggtactccgggatccgccacg
accccgaacactcccagtgcagcaacgggtgcagctatgtcagatgtcgccaaagggaag
cgaaggattaatgaagtgactcctgcaggcctttcggccgtgtcagctgaatcttctcct
ttacctcctgcggtacgatcacagaggagaaagtacaacacgttgcggcaaagagtattg
gaaaagaatgacgctctacggatgttacatcgtgatttggtgttgggaaggcaaattact
gaagaggaattctgggagggtagggaggcgctcattcaggcagaagaaatggcgtatgcg
caaaagcctggtaggccttctagactgttagatgaccgattcgatctcgatgcaggaagg
agaggcaagactactggaggaacaggtgtcggtatcaagcaggccgacaacgggccagtc
atattgaagctctcaaaagagttgacaagagaaatatttgaagaatttcctgttgttcag
gacgcttatgcgaaatatgtccccggaattaacgaaaccgaattctggtccaggtatttc
acatcacagctatgggaacgacatcgtgccagcgtgcgaaaatccgccaacgatgaaatt
tcaaggaaaaaggatgacatttttgaccagtatctggaggagccggattggaatctgcag
ccgaggcaacccatgccggatagagatggcgtggaacggtatcttgatttagcagcaaca
gaggaggatcacggagaggctacttctatccgagatgtcacaatgcaagcagggagggaa
cgaagtgctcttcctctaataagacgattcaatgatcattctaaaaaattgcttcgcgct
gcgagtgccgggcagactgttcgaaatagcgcttttggcggggacattgatatatatgaa
gagatcaatctcgaagaccttcacgatccttcaacaactccagctatcattctggacgtt
gaaaatgctgctgtcttgcatgaaggagatgataaattagctcctacaggcgttctccct
gggtattctgattcggagctcttggctatggccactgagtctgcttcgagcctacgtgat
agcgtgcctgatttctccagcgtctgtttggccaatcccggtccgtttatcgacaacgac
gaaactcagagaaatccagcatatgaagcgtttgctaaacagagggatagccaggctgct
gcattggccactgtgaaagatatgtggtcgcgggctaatgcggaaaatgctgtgttgcct
gtcttcccagagatgctttttgaacaaattcggtcatgccataattcggcgaccgagttt
ttgcgacaatactggtcagccattctaccgcctgtcccaggagcgcttggtgggcaagcc
ccaagtgctaaagatgccaaggccgccaagatggctagttatctgaagaatacttcaaat
aaaattgaagcaattgtacaaaccgcgcagatcactggtttcgatccagagagggtcaga
aaggcactcgcccctactcttggtgcagttgaggtggcccttgaaagagaaaggaaaagg
gtgaaaggtagatag
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