Cryptococcus neoformans var. grubii H99: CNAG_02166
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Entry
CNAG_02166 CDS
T08175
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03020
RNA polymerase
cng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNAG_02166
09124 Replication and repair
03420 Nucleotide excision repair
CNAG_02166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cng03021
]
CNAG_02166
03400 DNA repair and recombination proteins [BR:
cng03400
]
CNAG_02166
Enzymes [BR:
cng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNAG_02166
Transcription machinery [BR:
cng03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CNAG_02166
DNA repair and recombination proteins [BR:
cng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CNAG_02166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7518
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
23885821
NCBI-ProteinID:
XP_012049987
UniProt:
J9VSQ4
LinkDB
All DBs
Position
6:1024037..1030778
Genome browser
AA seq
1786 aa
AA seq
DB search
MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT
IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP
MVANAVRRIKAQHRLKAIWALAKDKKICEPDELDEKDNGDATFEDEYLQEQKAALKGHGG
CGHEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERNVSPGEVYNILKKITPEDLHIMGLN
ADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGV
PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKR
VDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARY
YVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIV
QDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWNGTIPPPAIFKPKPMWTGKQLLSMTIPK
GINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAAR
DFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMK
PKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSG
VVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQSL
DIIRLSDRAFERRYKIDVLGGSGFSKGVLQAGIDQSSISLQKLLDEEFAQISEDRRILRS
EIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQREALADRLLVVRGDD
KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMV
GTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLDPEY
SKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDIRLE
LHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHSEDNAPKLVIRIRVVAEK
EDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVVSQNGEYDQEKEWFLE
TDGINLKAVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRH
LALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDVDDCKGVAEN
VLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAAGIAGGMTPGGAMTPYDNLSP
MWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGISPAGYSPSSPAGYSPTSP
FAVTSPAYSPTSPFAGAAAGGASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFS
PSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAF
SPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPT
SPAYSPTSPTYGGAAPNGGTAQQQNGQARPGWGNTGGYGTSPSWKS
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcacatttccttactcctctgcgcctgttaaacaggtcaaggagattcagttt
ggtatcatgagcccagaggagattaaagccttttctgtcgccaaaatcgaatccaccgag
gtcttggatgagaatgggaagcagaaagttggaggtctgatggatcccaagatgggcacc
atcgacaggaattttaaatgtcaaacatgtctcgaaggcatgtccgaatgtccaggtcac
tttggtcatatcgaacttgccagaccggtttttcaccagggtttcattgtcaaggtgaag
aagatcttggagtgtgtttgctatagctgtgggaagctcaaggtcgacatgcgagatccg
atggtagcaaatgccgttcgacgtatcaaggctcaacaccgactcaaagccatttgggcc
ctcgctaaggacaagaagatttgtgaacctgatgagctggatgagaaggataacggcgat
gccacatttgaggacgagtacctacaggaacaaaaggcggcattgaagggtcacggtggt
tgtggtcacgaacaacccgtatggagaaaaaagggattaaaattgatgggtgtctggaag
cctactgacaagggagaggatgaggctgctgaaccagaggaacgcaatgtttctccaggg
gaagtttacaacatccttaaaaagatcactcccgaggatctgcacatcatgggtctcaat
gccgactatgcccggcccgattggatgatccttactgttcttcctgtacctcctgcagct
gtccgaccttcaattgccgtcgacggtggtgccatgcgtagtgaagatgatttgacctac
aagctttcacaaatcatcaagttcaatggcgtcgtacgtcgaatggaggcggaaggtgta
ccacccagtgtcgtgaacgaacagtttgacttgcttcagtatcatgtgtgtacttacatg
gacaatgatatcgccggattgcctagagatcaacagaagggaggtagggccatcaaggct
atcagggcgaggttaaaaggaaaagaaggtcgtatgagaggtaatctgatgggaaagcgt
gtcgacttttcagcgcgaacggttattaccggtgaccccaacttgcaattggatcaggtc
ggtgtgcccaagagtatcgccatgactttgacataccctgagcgagttactccatacaac
attgtctatcttcaaacacttgtcaacaatggtccggccacctatcctggtgctcgatac
tacgtcaaagacactggagaacgagttgatttgaagtaccgcaagtcaggtgaaccgatc
agtttgcagtttggttggattgtggaaagacatttgaaggatggagactatgtattgttt
aaccgacaaccgagtttgcataaaatgtccatgatgtcccatcgagtcaagttgatgaat
tattccactttccgtttgaacctttcagttacttcaccttataatgccgatttcgacggt
gatgaaatgaacttgcacgttccgcagagtgaagagactagagcagagttgagtcagatt
gcttgggttcccagacaaattgtctcgccccaagcgaacaagccagttatgggcattgtc
caggacactctgtgtggtattcgtaaattcactctccgagacaatttcctcgattggctt
caagttcaacacattcttctttggcttcccgaatggaacggaaccatccccccacccgcc
attttcaagcccaagcccatgtggaccggtaaacagcttttatccatgaccattcctaag
ggaatcaacatcacctataaaaacaacgaaaagccttctcctattgacgtgacggatgag
aatgtgttgatcgagaatggagagttggtgcacggaacgattgtcaagaacatggcgggt
agtgccaacaacggtttggtgcacgtcatcttccgagaattgggccatatcgctgctcga
gatttcttttcagcggtgcagagagttgttaactattggttattacactacggtttctcc
gtcggtatcggtgacaccattgtcgataaggcgactatggcgggtatcactaatagaatg
gtggaggccaaggaggctgttcaaaagttgatccaagaagctgaagcgaaccgaatgaag
cccaagcccggtatgactatccgagaaaccctcgaagcgtctatcgccgcagagcttaac
aaggcgcgtgattggactggtaagacgactcaggataacctcaaagcggacaacaatgtc
aagcagatggtggtgtcgggtgctaagggctcgttcattaacatctcccagatgagtggt
gttgtgggtcaacagttcgttgaaggaaaacgtatctcgttcggattccgacaccggtca
ttaccacacttctcaagagacgactacggacccgagtctcgaggtttcgttgaaaactcg
tatttgcgtggtttgactccacaagaattctggttccacgctatgggtggtcgagaaggt
ttgattgataccgctgtcaagactgctgagactggttatatccaaagaagattggtcaaa
gcgatggaggacttgaaggttgcttatgatggtactgtgagaaatagtgtgaatgaggtc
gtgcagttcttgtatggtgaagacggtatggacggtgctgcgatggagaagcagagtttg
gatattatccgactctctgatcgagcgtttgagaggcgatacaagattgatgttcttggc
ggaagtggcttctccaagggggtccttcaggccggtatcgatcaatcatccatctctctc
caaaagctccttgatgaagagtttgctcaaatttcggaggatcgtcgtatccttcgttcc
gaaatttacccggacggtacccctggtcatcccttacctgtcaacatccaacgtgtcatc
caaaattctcagcaaatcttccacatcgaccctcgtgttccctccgatctggatcccgtc
tacttgcttgagcaaagagaggcgctggccgatagattgcttgtggtgcgaggtgacgac
aagctttcaagggccgcccaaaaaaatgctactcttgtgttcaacatgcttttgcgatcc
catcttgctactcgtcgagttctggaagagtaccatcttaacagggaggctttcgattgg
gtcatcggagaagtggagcaaatctttaacaaggctgttgtcaatgctgccgagatggtt
ggtactcttgccgcccagtctatcggtgaacctgccactcagatgacactcaacacattc
cattatgcgggtgtggcgagtaaatctgttactggtggtgttccccgtctgaaggaaatc
atcaacgttgctgtcaacattcgaactcctgctctaaacgtctatctcgaccctgagtac
agcaagaccgaagaggatgcgcaccagatcatgcgaaagttgacatacactcgactaaga
gatattactgccactgttgaaatcttctacgaccccaagcttgactctacggatattgag
gaggacaaggactttgtggacgctttcttcgcgatccccgatgaagacatcagactggag
ctccattccccttggctattgcgtcttgagcttgaccgagccaaggtacttgaaggtgga
tatgaaatgtcgcagatcgttgatgccattgccgacaccgtgggcaaagacgtctttgtt
attcactctgaagacaacgctcccaagcttgttattcgtattcgagtcgtcgctgagaag
gaggatgaagaactgttgggtgacgaggacatgttccttaagaggattgaaggtaccttg
cttgaccaagttgaacttggtggtatcactggtatcactcgagttttcatctcggaaggc
aagcaggttgttgtctcccagaacggtgaatacgatcaggagaaggaatggttcctcgaa
acggacggtatcaacctcaaggcggttatggctgtggacggtgtcaatgctttcagaacc
tactccaacaactgttacgaagtctacgaaactcttggtatcgaagctgcccgaaacgct
ctctacaaagagctcaacggtgttattgagatgggcggttcttatgtcaactaccgacat
cttgcgctgttgtgtgaccttatgtgcagcaagggtgctttgatgagtattactcgacac
ggtatcaaccgaaccgatgctggtgctctttcaagagcggcgtttgaagagacagtggag
atcttgcttgaggctgcggctgtgggtgatgtggatgattgtaagggtgttgcagagaat
gtcttgttgggtcagatggctcctatgggtactggtgcttttgacgtttcacttgacatg
aacatgctcaaggatgtcattgttgaccaccgattaccggtgcaaaacatgatggccgcg
ggcatagctggtggaatgactccaggaggagcgatgactccttacgacaacctgtccccc
atgtggggtggagacaagggagctttgggtcacgcggcgttttcgcctatccaaagttcg
gcgaacgacgaaggtggcaactttgcttacatgggttatggacaatcgccaatgcacggc
ggtatatcccctgcaggttactcaccttcatcgcctgctggatactcgcctacttcacca
ttcgctgttacaagtccggcctacagccctacatctccgttcgcgggtgcggcagccggc
ggagcatccccttgggttggacgaggcgggtatggcgctaccagtcctgcttactccccg
acatctcctcaatattcccccacttctccccagttctcccctacatcaccatccttctct
ccatcttcaccgacttattcgccggcttctccggcttatggtggtgcgggtgccggaaac
agggcgtcgccttattctcccacatctccagcttacagcccgacaagtccaatgggtggt
atcacatctccgcaatacagtcctacgagccccaggtacagtccgacaagtccggcgttt
tcgcctacaagtccgtcgtacagtccaacaagccctgcgcccttccaagctaccagtccg
aggtattctcccaccagtcctcaattttctcccacgtcgcctacctactctcctgccagt
ccagcttattcacctacaagtccccaatattcacctactagtcctgcctacagtccgacg
tcgccggcttacagcccgacatctccgacgtacggaggtgctgcccccaacggcggtaca
gctcaacagcaaaacggtcaggcgagacctggatggggaaatacaggagggtacggcaca
tcgccgagctggaagagctaa
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integrated database retrieval system
