Cryptococcus neoformans var. grubii H99: CNAG_03345
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Entry
CNAG_03345 CDS
T08175
Name
(RefSeq) hypothetical protein
KO
K18748
protein SSD1
Organism
cng
Cryptococcus neoformans var. grubii H99
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cng03019
]
CNAG_03345
Messenger RNA biogenesis [BR:
cng03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CNAG_03345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
23886856
NCBI-ProteinID:
XP_012050922
UniProt:
J9VXY1
LinkDB
All DBs
Position
8:complement(696583..704402)
Genome browser
AA seq
1670 aa
AA seq
DB search
MADPLSPAPDHQSQATLAPPVHPSRPSSANSQKSNSSRSRGKNANGGSSNMSRTNSNTSG
QSDSGRSDKKRQSGPTTTISGGVSLGVSGEAPQQNKKGKGKGKNQDKEKEGEKKGASMEV
EKPQKNSSQKGKRSASGRKPHPINTNESSRTVSRNSEHENMPADAGSSQPAPGPKSIHAP
VSAPRTAIEAAVEAATKKHRSQTGGDALASLQKMISDLKTLPATSGPGSGSSAGSRSTSV
TRDPPSTSSAKAEPVAIPSALNSGSHKALKADAPTFTPSFQSFSPVASTSGLSVSPNNTM
PTLAQLHPRSQSQSNGAHHRRNSASSMSSVNFAPPFNPSPIQAFGNPLPPFYQTPLSVHA
EADDESLSPLSFAQHATFQYQQQQLLAAQQQQYQYIQLLQAQLAASQLAHQQAQQAAQHQ
NQQMGNFIAPRFQALAAQRAASQQQQQASQLAQAQQVFELQQAQLLQQQEEATRASVRAA
AEAAHPQNQPVFEEESPELQPHTVGTSGRPQLAPAFTFGAKPKHGVTESVSERGSGRESL
SPPQSSLSPIVVNRSEGIGGAAATGLAGLAARAHKRTGSEMSSVLQQQFAIQQEIEALQA
KQKALMQQDLAQQGDSPLAQLNTAYAQKQTPSQNLSRHRRVQSSLPSASVPVDFEREQDQ
PRSMKSVGEMLPPPIPSGHGRRHSVNVLNKTAGSGMGFGLADDIPEGVVAPSGHRRSGSR
SGLESGSWRLGASSGNAQSSQSQVADLAAAQAQLQSLAQFRAAAGGGHSKMASFSFPNML
PNLLAATTLQAPVGQSLWQQQQAFQMQLQQTTQGPQRKSLFAPYLPQASLPPLLQAGKLV
VGVLRVNKKNRSDAYVATDVLDADIYICGSKDRNRALEGDIVAVELLDVDEVWSTKKDKE
EKKRKKEENATYDLKPSTVKKLEKKKDDVEVEGQGLTLFDDEEVNDDTKPTYAGHVVAVV
ERMPGQLFSGQLGVLRPSSAATKEKQELERREREGDKARKEEPEARPKIVWFKPTDKRVP
LIAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPFGTLVEELGAIGNSEVETSAL
LKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERVFTIDPPHSKDLDDALSFK
DNKDGTFTVGVHIADVSFFVKTNTQLDREARKRATSVYLVQRVVPMFPPLLSEDLCSLIP
DYERLTFSAIFTVDEEGNVLQKKFAKTIVKSCAKLTYDDALTVVKGGALPRSKTSGTHLA
TDIERDIKSLHSIANKMRARRIENGAMVVSSSKVSFEFDAQGRPVDCRTYQKGEESAIVE
EFMLLTNQSAARIIANALPEQALLRRHEAPSERRLESFVARATKLGFDMDATSAGTLQKS
FDNVLDNDSALCIDLLRKKVIQRARYFCAGMLDIAKYAHWGLNTPLYTHFTSPIRRYADV
LVHRMVDACLTSPNPNEVKFLMDRDQVAKAAQQCNMKKQSAKLAEEQSVHLFLCILIDDL
TEHYGPVVREARVTNVLETAFDVIIPEFGVEKRVHVDKMPVETAVYDEHRDILSLYWTTK
DVISHLADTTEDRRLLKIKSLGEQRALGSSTSQPTDDTALFDGNSPAVVSKQYAKSAHPS
ALKFEGLRSVDGGHKVQDIKELMSLPVIITSDMTKSPPVLVVYACNPYAT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccctttgtccccagctcccgatcatcagtctcaagccacccttgcgccgccg
gtccatccttctcgtccaagttctgcaaactctcaaaagagtaattcttctaggagtcgt
ggtaaaaatgcaaatggaggatcatctaatatgtcgcgaaccaattcaaacacttctggt
cagtcagacagtgggcgaagcgataaaaagagacagagcggccccacaaccacaatcagc
ggtggtgtgagtttgggtgtgagtggagaggcacctcagcaaaataagaaagggaaagga
aagggaaagaaccaggataaggagaaggaaggcgagaaaaaaggcgcctcaatggaggtt
gaaaaacctcagaaaaacagcagtcagaaagggaaaaggtcagcctcggggagaaaaccg
catcctatcaatacaaacgaatcctcgcgtactgtgtcacgaaactcagagcatgaaaac
atgccggcggatgcaggttcgtcgcagcctgcacccgggccgaaatctatccacgccccc
gtgtctgctccacgaactgcaattgaagccgcggtggaggctgcgaccaagaagcacaga
tcacaaacgggtggtgatgctcttgcgagcttgcagaagatgatttctgatttaaagacc
ctacctgccacctctggacctggaagtgggagttctgccggatcgaggtcgactagtgtc
acccgggatcctccctccacttcttcggctaaagcagagccagtcgctattcctagtgct
ctgaactcgggatctcacaaggccctgaaggccgatgcgcctacgttcaccccttccttt
caatcattctctccggttgcctcaacatcaggtctttcagtctctcccaataacaccatg
ccgacactcgcccagttgcatcctcgctctcaatctcaaagtaacggggctcatcatcgc
agaaattctgcaagctccatgtcaagcgtgaactttgccccgcccttcaatccatcgcct
atccaggcctttgggaaccctcttcctccattctaccagacgccgttatcagtccacgcc
gaagcggacgacgaaagcctttcaccattatctttcgcacagcatgctaccttccaatat
caacaacagcagcttcttgcagctcagcaacagcagtatcagtacattcaacttcttcaa
gcacagctcgccgctagtcaacttgcgcatcagcaagctcagcaagctgcacagcaccag
aaccagcaaatggggaacttcattgctccccgtttccaagcgcttgcagctcaaagagct
gcctctcagcaacagcagcaagcctctcagcttgcacaggcccaacaggtattcgagctt
caacaagctcagttgcttcaacaacaggaggaagctactcgggcatccgtccgcgctgct
gcggaagcggctcatcctcagaatcagcctgtattcgaagaggaatcgccggaactccaa
ccccataccgttggaacatccggtagacctcagcttgctcctgccttcacctttggagct
aagccgaagcatggcgtgacggaaagtgtgtcggaacgaggttccggaagagaatcgttg
tcgcctccccagagcagtctgtcgcctattgtggtgaaccgaagcgaaggtattggaggt
gccgctgccactggacttgcaggcctggctgctagagcacacaaaagaactgggagtgaa
atgtcatcagttttacagcagcagtttgccatacaacaagagatcgaggccctccaagct
aagcagaaagccctcatgcaacaggatctggcccagcaaggcgacagccctcttgcgcaa
ctgaacactgcatacgcacagaagcaaacgccttctcagaacctttcccgccatcgtcgt
gtacaatcaagcttgccttcggcttcagttcctgtcgattttgaacgcgaacaagaccaa
cctcgttcaatgaagtctgtcggcgaaatgctccctccacctataccatcgggtcacgga
aggcgccatagcgtcaacgttctcaataagactgccggctctggtatgggtttcggtttg
gcggatgacattcctgagggtgttgtggctccctctgggcatcgtcgatccggcagccga
tcgggacttgagagcggcagttggcgccttggtgcatcgtcgggcaatgctcagagtagt
cagagccaagttgctgaccttgctgcggcgcaagcccagcttcagtctctggcacaattc
cgggcagctgctggtgggggacactccaagatggcttcgttcagcttccccaatatgtta
ccaaacttgcttgccgcaactactttgcaggcaccggttggccaatctctctggcaacaa
cagcaggcatttcagatgcagttgcagcaaacaactcagggtcctcaacgcaaatctctc
tttgcaccctatctcccccaagcatcattaccaccccttcttcaggccggtaaactcgtc
gttggcgtactgagagtcaataagaaaaatcgttccgacgcctatgttgctacagacgtt
ttggatgccgatatatacatctgtggctcaaaagacaggaacagggcgcttgaaggtgac
attgtcgctgttgaattgctggacgttgatgaggtgtggagcacaaagaaggataaggag
gagaagaagaggaagaaggaggagaacgcgacatatgatctgaaaccctcgactgtgaaa
aagctcgaaaagaaaaaggatgatgtggaagtcgagggtcagggcttgaccttgtttgac
gatgaagaagtaaatgacgacacaaagcctacttatgctggtcacgtcgtggctgtggtt
gagcgaatgcccggccagttattctccggacagcttggcgttcttcgtccatcctcagct
gccacaaaagaaaagcaagagcttgaacgtcgcgaaagggagggcgacaaagctaggaag
gaagagcctgaggcccgcccgaagattgtctggttcaagccgaccgataagcgagtgcca
ttaattgccattcctactgaacaagctcccgccgatttcatcgacaacccggacgcatac
agcaacaagctcttcgtggctacaattaagcgatggcccatcacctcacttcatcctttc
ggcactcttgtggaagagcttggagccatcggcaactctgaagttgagacaagtgctttg
ttgaaggattgtaacttccccactgaggagttctctgagatgaccatgaaatgtttgcca
cctatgccatggagcgtcccagagcgagagtacgatgtccgaacggatttgagggaggaa
agagtcttcacaattgacccaccccactcaaaggatttagacgacgctctttctttcaag
gataataaagatggaacgtttactgttggtgtccacatcgcagatgtatccttctttgtc
aaaaccaacactcaacttgatcgggaagctcgtaaacgtgctaccagcgtttacttagtt
cagcgcgttgttccgatgttccctcctttgctatccgaagatctctgcagtcttattcca
gattatgaacgactcacgttctccgcaatcttcaccgtggacgaggaaggcaatgttctg
caaaagaagtttgcgaaaaccatcgtaaaatcttgcgccaaattgacctatgacgacgct
cttactgttgtaaagggtggtgccttacctcggtccaagacttccggtacacatttagct
actgatattgagagagatatcaagtccttgcactccattgccaacaaaatgcgggccaga
cgaatcgagaatggggcgatggttgttagctcatcaaaagtatcgttcgagtttgatgct
caaggtcgcccagtcgactgccggacgtatcaaaagggtgaagagtccgctatcgtggaa
gaattcatgcttctcacaaaccagtcggccgctcgcattatcgcaaacgcccttccagag
caagctcttcttcgtcgccatgaggccccatcggagcgcaggctggaatcttttgtcgct
cgagctaccaagcttggctttgatatggatgctacgagtgctggaaccttgcaaaagtca
tttgataatgtgctagacaatgattctgccctttgcattgatcttttgaggaaaaaggtt
atacaaagagctcgatacttttgcgctggtatgctggatattgcaaaatacgctcattgg
ggtctgaacactccgttatatactcattttacctctcccatccgtcgctatgccgacgtc
ctcgtccaccgcatggttgatgcatgcttgacaagtcccaatcctaacgaagtaaaattc
cttatggacagggatcaagtcgccaaggcagctcaacaatgtaatatgaagaagcagagc
gccaagctggccgaagaacaatcagttcatctctttctttgtattctcattgatgatttg
acggaacactacggccctgttgtccgcgaagctagggtgacaaacgttctggagactgca
ttcgatgtaatcattcccgagttcggcgttgaaaaaagggtacatgtagacaagatgccc
gtggagactgctgtctacgatgagcatcgggatatcctatcgctatactggacaacgaag
gacgttatctctcaccttgccgataccaccgaggacagacgcttattgaagattaagtcc
cttggagaacaacgtgcgcttggatcctctacttcccagcctaccgatgacactgctttg
ttcgatggcaacagccctgccgtggtttctaaacagtatgcgaagtcagcccacccttcg
gcactcaaatttgaggggctccgctctgtagatggaggtcacaaggttcaggatatcaag
gagttgatgagtctgccggtcatcattaccagtgacatgactaagagtccacctgttttg
gttgtgtatgcttgtaatccgtacgcgacataa
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integrated database retrieval system