Cryptococcus neoformans var. grubii H99: CNAG_03950
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Entry
CNAG_03950 CDS
T08175
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
cng
Cryptococcus neoformans var. grubii H99
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cng03021
]
CNAG_03950
03036 Chromosome and associated proteins [BR:
cng03036
]
CNAG_03950
Transcription machinery [BR:
cng03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CNAG_03950
Chromosome and associated proteins [BR:
cng03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CNAG_03950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
HHH_9
CTD
SH2
HHH_3
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
23887403
NCBI-ProteinID:
XP_012047569
UniProt:
J9VP49
LinkDB
All DBs
Position
2:1259131..1264165
Genome browser
AA seq
1506 aa
AA seq
DB search
MSDKSGSASEGEGDEIRPYGEDRDSSEESEDDDPEEAKRIAEGFIVDEDEEDGEGEDDEE
DEEARRRRRKEEKRRRKKERRMRREREEAELSEDELELIEENRGLREGRPLKRLRRRSGS
DGSENDRAVPTLQDMFRDDEDRMEDDDDDLMDFIEEDEEDEANQGETEEQRRERKRAEKL
KRREQARSRPELTGVDRSSWDEIFAVFGDGQDYDWALEGEDGMDLDEEEEAAKKDLRLED
VFDPAEIKARRLQDEDKAVANADRPERHQIVNSTLSDNPVFATDTLYPPPDFAAKWVAPK
VSFRTQYLFYNQHPEGSYPIPTIDNPQPYPVYRRPDLEIEFEKAVSTALNMMFVQHLEVP
YLWHYKRDVFSLLENQGQSSVLFLERDELWQVYVLGQRYRAIHERNEQTRQQWGKIKARK
GDIEDEYFTKGLLGKACVASIEAAGEGAEWLAYHYASDIKAIKEEEAFDEVSKKLPERAE
QEDIRRGRIMKLVEAFGIDTNKVASSFQDVHGQPAPVMNPDKMPLELADEFTGAAYSSPE
QALSAASFVLVQELSKDPAIRQQARDFMDACGLVTVNATDRGMSAIDQYHLYYNFKFLTN
KPVLDFRDSPQFIHMLKAEEEGLISIAFDIPEDMLASFTDALIRCCRSNDYGEIALAWNE
VRVEVCNMLVKKHLMPMASKWIKEHLRAQAEEYVAERCREELELRVNVRPYASSSMEQGE
TPSVLAITNGKGDIRDAVMAVMLDDEGNVRTQTKFDNLRDEEDKTMFIELLEKRKPKVVV
IGGFSVQTARLKDAALAAIRQHAIELLGQNPPVSDAYPDHEGFQYAMAEYDEKLKAHLIP
LIFVNDATARLYMSSEEAEKEHPNLPLNGRYALGLARYAQNPLNAYCKLGRHIASVTFME
HHQKLIPHEKLLYHLERGLVNSVCFMGIEINSCVADPYQRAMLPYIAGLGPRKADAVIYG
IQKHGALINRMAFTDLGLFGPTIFENTAGFLTIESDLKDMMLEAENPQEQPDPLDMTRIH
PENYEFAQKMCQDALDLDVEDVADRHKSEVVQTLMLDDKRGKKLGELNLDDFAFNLQRQG
EGNKRHTLGEIVSELIRYRSDRRPAFYVPTDWEIVTMVTGETERTVGRGLKVTATVRKAI
SARVFCQLESGLDAVLERDYVADEDQAPVTSCDEVFKPRQAIKGVVIMPEPARFQVRIST
RSSDLRQGVDFVQPFKDEEYNSKDRRDAAEAATAAKKQRRAGKVQRIVNHPNWHVLNSGQ
AEQFLASQHRGDCVIRPSSKGPDRIAVTWKVDEDVYQHIDVQEIDKPNEYSLGRILMVSG
QYRYSDLDDLIINHVKATARKFDEIQMHEKYKPEHELDAFLKNYVQAHPGRSIYGFSVDS
DRPGYLKLCFLSKPTKDGGVIQTWPVRVLPGAYKLGNAIVPGVTELSNAFKMQYSEKLAE
QGHQGKTPGIYLGKTPMHLGGRTPALGSRTPAMGSRTPALGSRTPALGSRTPALGSRTPA
QGGPRY
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaagtctggctccgcctctgaaggcgaaggagacgaaatccgaccatacggc
gaagatcgcgactcgtctgaagaatctgaagatgatgaccccgaagaggccaagcggatc
gctgagggattcatagttgatgaagacgaggaggacggagaaggagaagacgacgaggaa
gatgaagaggcaagacggagacgaaggaaggaagagaaacgacgtaggaagaaggaaaga
cgaatgagaagagaacgagaggaagcagagctctcggaggatgagctggagttgatagaa
gaaaatcgcggactgcgtgaaggaagaccattgaagagactgaggaggcgtagtggatct
gacgggtcagagaatgacagggctgtgcccactcttcaagacatgtttcgggatgacgaa
gaccggatggaagatgacgacgacgacctcatggacttcattgaggaggacgaagaggat
gaggccaaccaaggggagaccgaggaacagagaagagagaggaagagggcagagaagttg
aagaggagagaacaggccaggagccgtccagaattgactggagtagaccgatcttcatgg
gatgagatttttgctgtgtttggcgatggtcaagattacgattgggctctcgagggcgag
gacggcatggatctggatgaagaagaagaggcagctaagaaggacctccgtctagaagat
gtgttcgaccccgccgaaatcaaagcaaggagattacaggatgaagataaggctgttgcc
aatgctgatcgacctgagaggcaccaaattgtcaactctacattatccgacaatccggtc
ttcgccaccgatactctttacccacctcctgattttgccgcgaaatgggttgcgcccaag
gtttccttccgtactcagtatctcttttacaatcagcatcccgaaggatcttaccctatt
cctactattgataatcctcaaccttatccagtctaccgccgacctgatctcgagatagaa
tttgaaaaggctgtatcgaccgctctcaacatgatgtttgtgcagcacttagaggtaccc
tacctgtggcactacaagcgcgacgtattcagtttgttggagaaccaaggacagagctct
gtgcttttcttggagcgagatgaactttggcaggtttatgtccttggtcaacgctaccga
gcaattcacgaaaggaatgagcaaactaggcaacagtgggggaaaatcaaagcgcgaaag
ggtgatattgaggatgaatatttcaccaaaggattgcttggtaaagcttgtgtggcgagc
attgaagcggctggagaaggcgctgaatggcttgcataccattatgcgtctgatatcaag
gcaattaaggaggaagaagcctttgacgaggtatcgaagaagttaccagagagggcagag
caagaagatattaggcgagggaggattatgaaattggttgaggcctttggtatcgacacc
aataaagtagcttcatccttccaggatgtccatggtcaaccggcgcctgtaatgaatccg
gacaagatgcctctcgagttggcggacgaatttacaggtgcagcatactcaagccctgaa
caagctctttctgccgcaagctttgttcttgtccaagagctgtccaaggacccagctatc
cgtcagcaagctcgagacttcatggatgcctgcggtctagtaacagtaaatgccactgat
aggggcatgtcagcgatcgaccagtatcacctttactacaattttaagttcctcaccaac
aaacctgttctcgatttcagggacagtcctcaattcattcacatgctcaaggccgaggag
gagggtcttataagtattgcattcgacattcctgaagacatgctggcatcattcactgat
gctcttatccgatgttgtcgatcgaatgactacggggagattgccttggcctggaatgaa
gtcagggtggaggtttgcaatatgttagtaaagaagcacttgatgcccatggcctccaaa
tggattaaggagcatctcagggctcaggccgaggaatacgttgctgaacgttgtcgagaa
gagttagaactgcgtgtcaatgtccggccctacgcctcatcgagcatggaacaaggtgaa
accccctcagtcctcgccatcaccaacggaaagggtgatatccgagatgcagtcatggct
gtcatgctcgacgacgaaggtaacgtacgcacacaaaccaaatttgacaatttgcgtgac
gaggaggacaagacaatgttcatagagttgctggaaaagcgaaagcccaaggtcgtcgtc
attggtggtttttctgttcagactgcccgtctcaaagacgctgctctggctgctattcgc
cagcacgccatagaacttctaggtcaaaacccgccagtatcagatgcttatcctgaccac
gaaggatttcagtatgctatggccgaatacgacgagaaactcaaggcgcatctaatccct
cttatttttgttaatgacgcgacggcgaggttgtacatgtcttcagaagaggctgagaaa
gaacaccccaacttgcccttgaatggacgatatgctttgggtttggcgaggtatgcgcag
aaccccttgaatgcgtattgcaaactgggtagacatattgcttcagtaaccttcatggag
catcatcaaaagcttattcctcatgagaagcttctctaccatctcgaacgaggtctcgtg
aactcagtctgcttcatgggtatagagatcaactcatgtgtggccgatccttatcagcgg
gcaatgttgccatacattgctggtctcggccccagaaaggcagatgctgtgatttatggt
atccagaagcatggcgcccttatcaatcgtatggcgttcaccgacctcggtctctttgga
cctaccatctttgaaaacactgctggtttccttacaatagaatctgatctcaaggacatg
atgctagaagccgaaaacccccaagagcagcccgaccctcttgatatgactcgaatccat
cccgagaattacgaattcgcccaaaagatgtgtcaagatgctctcgatctcgacgttgag
gatgtggcagatcgacacaagtcagaagtcgtccagactcttatgcttgatgataagcga
ggcaagaaactaggagagctcaacttggatgattttgctttcaaccttcagcggcaaggt
gaaggtaataagcgtcacactctcggagagatcgttagcgaattgattagataccgatct
gatcgacggcccgccttctacgtccctactgactgggagatcgtgactatggttacggga
gaaactgaaaggactgttgggagaggattgaaggtgaccgcaaccgtcaggaaagccatt
tccgctcgagttttctgccagctcgaatcaggtttagacgctgttctcgagcgagattat
gttgccgacgaggatcaagctccagtcacctcttgcgacgaagtgttcaaacctcgccaa
gctatcaagggtgtcgtcatcatgcctgagcctgctcgtttccaagtccgtatatcaacc
cgatcttctgatctccggcaaggtgtcgattttgtccaacctttcaaagatgaggaatac
aacagtaaagatcgtcgggatgctgctgaggcagcgaccgccgcgaagaagcaacgtaga
gcgggcaaggttcagcgtatcgtcaaccaccctaactggcatgtccttaactctggtcag
gccgagcaattccttgcaagccagcatcgaggtgattgtgtcatccgaccctcatctaag
ggtcctgataggattgcggtgacctggaaggttgatgaagatgtttatcaacacattgat
gtacaagaaatagacaagccaaatgagtactccctgggaaggatcctgatggtcagcggc
caatatagatatagtgatctggatgacttgatcattaaccacgtcaaagcgaccgcgagg
aagttcgatgagattcaaatgcacgagaagtacaagccggagcacgagcttgatgctttc
ctgaagaactatgtacaggcccatcctgggagaagtatctatggcttcagcgttgacagc
gatcgaccaggatacctcaagctttgcttcctcagcaagcctacaaaagatggcggtgtc
attcaaacctggcctgtccgagttcttcctggtgcctataagcttggtaacgctatcgtc
ccaggtgtcactgagctcagcaatgccttcaagatgcaatactctgaaaagcttgcagaa
caaggccaccaaggcaaaactccgggtatttaccttggtaaaacccccatgcatcttggt
gggcggacgcctgccctagggtccaggacccctgctatgggttcaagaactcctgctcta
ggctccagaacgccggcccttggatcaagaacaccagccctggggtctcgaactcccgct
cagggagggccgaggtattaa
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integrated database retrieval system
