Cryptococcus neoformans var. grubii H99: CNAG_05627
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Entry
CNAG_05627 CDS
T08175
Name
(RefSeq) ATP-dependent rRNA helicase SPB4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cng
Cryptococcus neoformans var. grubii H99
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cng03009
]
CNAG_05627
Enzymes [BR:
cng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNAG_05627
Ribosome biogenesis [BR:
cng03009
]
Eukaryotic type
Pre-60S particles
Helicases
CNAG_05627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
VirB8
Motif
Other DBs
NCBI-GeneID:
23888925
NCBI-ProteinID:
XP_012053682
UniProt:
J9VXR3
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All DBs
Position
14:816201..818842
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AA seq
725 aa
AA seq
DB search
MDAPVPAAPAFGGSWTKLNPPLSPWIMDVINTMGFKNMTPVQAGTIPRAVKNQDCVVEAV
TGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELATQIHAVFDHFLSSLIPPES
EDETGDVEAYAPPVASSSRSPSPQIPDRPLFPFPMLVTSGTPTPYETFQSTHPSILIGTP
GRLAAFLLNPRGLAIVRVSELDVLVLDEADRLLSSPDHRRDVERIMRHLPKQRRTHLFSA
TMTDAVEEMIGLGLRNPVRIVVNLKDKRKNGEEPRERRTPMALQNTYLVCRHAEKTLQLI
RLLLSESTKHERSKFIVYFSTCAAVDYFYRILSRLLPLSKFHLTSFHGELPPKIRETALS
TFTSHPSSHLSPAVLLCTDVAARGVDFPDIDVVVQYDAPTDPKTFSHRAGRTARAGRRGK
AVVLLGKGREEDYVDFLNIRKIPLTKQPYINASLEEVDTPQTLDPEATTLLHSIRQIILT
DRELSDKAAKSFVSAFRAYSKHEASFIFRTSDFDFNSQAISFGLLRLPAMPEIKDWKKKK
EAERQRLEKIKSEGGEVEEREVIEWEDADVNWDTFAYASKQREASRLAALAQRADNQSSN
DAARAEARVKRKIKAEMREAWSEQKERKMRKEERREKKDAKKKYEWELEQANGEEDRQSD
LVNIAKAQAERKKRKEREEKGWDEEMGKEYKSLKREIKEEKSVNKSSKGGAGGGGIGGGM
FDDLE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacgctccagtaccagcagcaccagcattcggcggatcatggacaaagctcaatccc
ccactttctccatggatcatggatgtcatcaacaccatgggcttcaagaatatgactcct
gttcaagcaggtactattccgagagcggtgaagaatcaggactgtgtagtggaggctgtt
actggctctggtaaaactttggcattcacgatccccgtcttggaacgattgtcaagacga
gaagaaccgtataagaagggcgagattgccgccatagttgttgcgcctacacgggaactg
gccactcaaatacatgccgtcttcgaccacttcctgtcatctctcatccctccggaaagt
gaagacgagactggcgatgttgaagcttatgctccacctgttgcatcttcatcacgttca
ccatctcctcaaatccctgacagacctctgttccctttccctatgcttgtaacctcggga
actcccactccctatgagacttttcagtccacccatccatcgattcttatcggtacccca
ggacgtctcgccgcatttctcctcaatcctcgcggcctggctatagtccgagtatcagaa
ttggatgttcttgtcctcgacgaagctgacaggctgttatcaagccctgatcacaggaga
gatgttgagagaattatgcgtcatctacccaagcagcgccgaacccatttgttttcagct
accatgaccgatgcggtggaggagatgatagggttgggccttcgtaatccggtcagaatt
gttgtcaacctgaaggataagaggaagaatggcgaagagcccagagaacgaaggactcct
atggctctccagaatacatacctagtctgccggcacgccgaaaaaactctacagcttatc
cgcctcctcctctccgaatccacgaaacacgaaagatccaaattcatagtctacttctcc
acttgcgctgctgtcgattacttttatcgcattctttcccgactcctaccgctctcaaaa
ttccatctgacttctttccacggtgaactgccgccaaagatccgagagactgcgctttca
acattcacatcgcatccctcatcccatttatccccggcagtcctgttatgtacggacgta
gcggcaagaggcgtggatttcccggatatagatgttgtagtgcagtatgatgcgcctacg
gaccccaaaacgtttagccatcgagctggaaggacggctagagccggaagacgaggaaag
gcggtcgttctattaggtaaaggtcgtgaagaggattatgtcgatttcctgaacattcgt
aaaattcccttgaccaaacaaccatatatcaacgcttctctagaagaagttgacactccc
caaaccctcgatcctgaagccacgactcttcttcattcgatccgtcaaatcatcctcacc
gaccgtgagctctctgacaaggctgcaaagtcattcgtctcggcattcagggcatactcg
aaacatgaagcgtctttcatcttccggacttcagactttgatttcaactctcaagcgatt
agctttgggttactgagattaccagcgatgccggagatcaaagattggaaaaagaagaag
gaggcagagagacagagattggagaagattaagagcgagggtggggaagtagaggaaagg
gaagtcatcgagtgggaggatgctgatgtaaactgggatactttcgcctacgcatcaaaa
caacgcgaagcttctcgtcttgccgctctcgcgcaaagagctgacaatcaatcatccaat
gatgcggctagagccgaagcccgagtcaaacgaaagataaaagcagaaatgcgagaagca
tggtccgaacaaaaagaacggaaaatgagaaaggaagaaaggagggagaagaaggatgca
aagaaaaaatatgaatgggagttggagcaggcaaatggtgaggaggatcgacagagtgat
ttggtgaatatcgccaaagcgcaagcagaaaggaagaagaggaaagaaagggaagaaaag
ggctgggatgaagagatgggaaaagagtataagagtctgaagcgagagatcaaggaggaa
aagtctgtcaacaagtcgagtaagggcggagctggtggaggaggtataggtggtggtatg
tttgatgatctcgagtaa
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