Cryptococcus neoformans var. grubii H99: CNAG_05797
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Entry
CNAG_05797 CDS
T08175
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03008
Ribosome biogenesis in eukaryotes
cng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CNAG_05797
09123 Folding, sorting and degradation
03018 RNA degradation
CNAG_05797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cng03021
]
CNAG_05797
03019 Messenger RNA biogenesis [BR:
cng03019
]
CNAG_05797
03009 Ribosome biogenesis [BR:
cng03009
]
CNAG_05797
03016 Transfer RNA biogenesis [BR:
cng03016
]
CNAG_05797
Transcription machinery [BR:
cng03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNAG_05797
Messenger RNA biogenesis [BR:
cng03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CNAG_05797
Ribosome biogenesis [BR:
cng03009
]
Eukaryotic type
Pre-60S particles
RNases
CNAG_05797
Transfer RNA biogenesis [BR:
cng03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CNAG_05797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Imm5_like
Motif
Other DBs
NCBI-GeneID:
23889086
NCBI-ProteinID:
XP_012050536
UniProt:
J9VRS6
LinkDB
All DBs
Position
7:complement(902807..906952)
Genome browser
AA seq
1129 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM
NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR
SRRFRAAQEAADKEEERKEAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL
KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA
DLIMLSLATHEPHFRVLREDVFAQSSKGPPACKNCGKVGHIAANCKSDKKVKDPNVVEVA
KTEDPKPFIFLDVACLREYLAIELVVPGVPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL
EIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKDDEER
QEHSQKRRRLEEHKRQDEDKAREEGRNTLTLNGTEYIAVDNPAATARGGPLHPSLPSRPA
FDLVPKEEAAKQPDDQDQMAKKAMAGSNSDIVKNRKAIRMANMSAAQALKAELEGDNDVN
VDDEKAIAQEGKEEDEAVVTVERTEDEEKEQLTKEEARGTLEEQGEKEGVDEEVVPPAIQ
TDEDEGEAPVGEATMAENDESATPDDDEDPTQVPRKRKRGDSDGDGESNEEDDDDDDDAP
PNPEADQPIPKKKLKVNADGTVDYEDDVKLWEPGYRERYYEKKFGVKLSEREFIDKVTKS
YMEGLCWVLEYYYQGVPAWDWFYPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVF
PAASRIHLPEPLQTLMIDEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTAL
KSKEELLSDDEKRRNSWGDNVMFIANENPLYDLFCDKLYGLRAKDVNKPIPIDTKASYGI
TGSVLPDPNCVPASTFDTPIPSISECPDLNPNDSISVRYYFPRQAHPHRSILLRGYKPEP
ARLTESDKDWVRRGGQGGRRGHRHNGGGTGNVTGGPGMARGRYESGPPRTNGYQPTPPRS
NYGGNSGYGYGAPAPLPSRPPVSSYGGGASGYGYGNPYAAAPNPYAGGYGAPAPYAAGGY
GQRPYVPPPPPPNPYSAPPPAYGRPPGGGYGYGAPPPRGGGYNPYASRR
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagctcttttccgatggctttctaagaagtaccccaagatcgtcgagcgg
gtgaaagaggacactcccaaaaagatcagaggtccagatggcgaaattgttgaggagcct
ataagatatgaaaatcccaatcctaacgggttcgaggtggataacctttatctggatatg
aatggtatcgtgcatccctgtacgcaccccgaaggccgaccggcaccagagacagaagag
gaaatgatggtggagatcttcaaatatactgaaagggtagtcaacatgtgcaggccgaga
aaagtcttgatgatggctatcgatggtgtcgcccctcgagccaagatgaatcaacagcgt
tctcgtcgtttcagagccgcccaagaagctgcagacaaggaagaggagagaaaagaggct
atcaaattgttcgaagctatgggccacgccgtttcagaagagaccgccaaccacaagagt
tgggacaccaacgcaatcacccctggtacaccattcatggacctcctctcaatatcacta
aagtactgggtgtctcacaagctcacaaccgatcctggatggaaagatctcaaaattatc
ctctctgactcatccgtccctggtgagggtgaacacaagattatggactggattcgtcgt
cagcgaagctaccccacatgggatgccaacacgtcacatgtcatctacggtttggatgct
gatttgattatgctttcgcttgctacccacgaacctcatttccgtgttcttcgagaagac
gtcttcgcccaaagctctaaaggaccacctgcttgcaaaaactgcggcaaagtcggtcat
attgctgccaattgtaagagcgataaaaaggtcaaagatcccaatgtcgttgaagttgcc
aagacggaggaccccaaacccttcatctttcttgatgtggcctgcctgcgcgagtatttg
gcaatcgagcttgttgtaccaggcgtgcccttcccgtttgaccttgaattggcgattgat
gattggattttcatgattttcttcgtcggtaacgattttttgccccatctgccgagtttg
gagattcgtgaaggtgccatagatgtgctgctcaagatctggagggcagagctaccgagg
atgggtggttaccttaccaatcacggtaaggtcaatcttgaccgagctcaagttatcttg
gaaggattggccaagtccgaggatgaaatcttccaaaagagaaaggatgatgaagagcgt
caggagcattcccagaagcgtaggaggcttgaagagcataagcgacaggatgaggataag
gcgcgtgaagaaggacgtaacaccttgactttaaacggcacagaatacatcgctgttgat
aatcccgctgcgaccgctcgtggcggacctcttcacccatcattgccgtctcgaccggca
ttcgacctcgtccccaaggaggaggcagctaaacagccagacgatcaggaccaaatggcg
aaaaaggcaatggctggctccaactcggatatagtcaagaatcgcaaggcgatcaggatg
gcaaatatgagtgcggctcaggcactcaaggctgagttggagggtgataatgatgtgaat
gtcgacgacgaaaaggcgattgcccaagaaggaaaggaagaggatgaagcagttgtgact
gttgagaggacggaggacgaggaaaaggagcagttgacgaaggaggaagccaggggaact
ttggaagagcaaggcgagaaggagggtgtcgatgaagaggtggtcccgcccgctatccaa
acggacgaggatgagggtgaggcgcccgtcggtgaggccaccatggctgagaatgacgaa
tctgctacccccgacgacgatgaagaccccacccaagtcccccgcaagagaaagaggggc
gattccgatggtgatggggagagcaatgaggaggatgacgatgacgacgacgatgctccc
cctaaccccgaagccgaccagcctattccgaagaagaaactcaaggtcaatgcagacgga
acggtcgattatgaagatgatgtcaagctatgggagcccggatatagagaaaggtactac
gagaagaagttcggtgtaaaattgtcagagagagaattcattgacaaggttaccaaatcc
tatatggaaggactctgctgggttcttgaatattattaccagggtgttcctgcatgggat
tggttctatccttatcattatgctccctttgctcaagacttccgcgatgtcgggtctatg
gacattaaattcgagaccagcatacctttcaagccgtttgctcagcttttaggtgttttc
ccggccgctagtcgaattcatctgcctgaacctttacaaactctcatgattgacgaagac
tcccccatcctcgatttttaccctcccgactttgagatcgacatgaacggcaaaaaaatg
gcttggcaaggtgtcgctctcttgccatttatcgaccaaaaccgccttttgactgctttg
aagagtaaggaggagctcctgtctgatgatgagaagaggaggaacagttggggagacaat
gttatgttcatcgccaatgagaacccgttgtatgatttattctgtgataaattgtatggt
ttaagggcgaaggacgtgaacaagcctataccaattgacaccaaagcttcgtacggaata
actggttctgttctacccgatcccaattgtgttcctgcgtccacattcgacacgcctatt
cccagcatttccgaatgccctgatcttaaccccaacgactctatctccgtccgatattac
ttccctcgccaagcgcatcctcatcgatcgatccttctgcgaggatataaacctgagcct
gcgaggctgacagaaagcgataaggattgggttcgacgcggcggtcaaggtggaagaaga
ggtcacaggcacaacggcggtggaaccggaaatgtgacaggcggacccggtatggcgagg
ggaaggtacgagagtgggccgccacggaccaatggctaccaacctactccgcctcgctcg
aactatgggggtaattcaggctacggatacggtgcccctgcacctctaccatcaagaccg
cctgtatcgtcttacggaggtggagccagcggatatggctacggtaacccctatgctgca
gcgccaaatccttatgccggaggttatggagcacccgcaccttatgctgcaggcggctat
ggtcagcgtccctacgtaccaccaccgcctccgcctaacccatactctgccccaccacca
gcttatggcagaccacctggcggaggatatggttatggtgctcctccgccaaggggcggc
ggttacaatccttatgcctccaggaggtag
DBGET
integrated database retrieval system