Cryptococcus neoformans var. grubii H99: CNAG_06393
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Entry
CNAG_06393 CDS
T08175
Name
(RefSeq) transcription initiation factor TFIIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cng
Cryptococcus neoformans var. grubii H99
Pathway
cng03022
Basal transcription factors
cng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cng00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNAG_06393
09124 Replication and repair
03420 Nucleotide excision repair
CNAG_06393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cng03021
]
CNAG_06393
03400 DNA repair and recombination proteins [BR:
cng03400
]
CNAG_06393
Transcription machinery [BR:
cng03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNAG_06393
DNA repair and recombination proteins [BR:
cng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNAG_06393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
23889604
NCBI-ProteinID:
XP_012053316
UniProt:
J9VYV3
LinkDB
All DBs
Position
13:369220..371191
Genome browser
AA seq
491 aa
AA seq
DB search
MVQPSFSGPKRDAAKQASPTFALDIFLDNQHQSYFEELYRSEAVCLCILRLLPSVCRQII
LHALWSHHPLRTVDVKLLLQMDVHAPLEECDEVMRPAIDRKVLHPMHYKKQKMQWSMNDS
FKKGLRNALTGLGTSNSFGVPFERHQATDLDLPSEDELVAYGEDTFESILKYMVSSGLGT
EFSGSRPQPEVLQLLHASGLMTDPGDMTGRNPNINRLTITSKGFQFLLEKRQTQLWEILM
YYLSAKEANSERSSEVLSMFFSLGCMQLGQDYSASKSFPHAQEALDDLAQYGFIYKSSPG
SDQFWPTHLATSLCSGDASAIQSQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIR
IRYPNLVVGKLDRQHVKAAMEKGISAGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLW
DRERNRLQTEETVMYEFFSKELFDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFV
KQRQNVLRGGY
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaccatccttttcaggccccaagagggatgctgccaaacaagcatcaccgaca
tttgcccttgacatcttcctcgataaccagcaccagtcgtatttcgaggagctctacagg
tcggaggcggtttgtctatgtattctgagattactaccgtcagtatgccgtcaaattatc
ctccatgccctgtggtcccaccatccattacgaacggtcgatgtcaagctgcttctccag
atggatgtccatgctcctttagaagaatgcgacgaggtcatgagaccagctatagacagg
aaggtcctccatccaatgcattataagaaacagaaaatgcagtggtccatgaatgattct
ttcaagaagggcctgagaaatgccttgacaggattaggaacatcaaattcgttcggtgtg
cccttcgaaagacatcaggcaactgaccttgatcttccctccgaggacgagctggtggca
tatggcgaggatacttttgagtctattctcaaatacatggtgtcttctggtcttggcaca
gaattctctggatccaggccacagcctgaagtactccaactcttacatgctagcggcctc
atgactgatcctggagatatgacggggagaaatcccaatataaatcgactcacaatcact
tccaaaggctttcaatttttgctcgagaagaggcagactcagttatgggagatactcatg
tactacttgagtgccaaagaagcaaactctgaacggtcatctgaggtcttgtcaatgttc
ttttccctcggatgtatgcaattaggacaagactattccgcatccaaatctttccctcat
gctcaagaagctctcgatgacctcgctcaatacggtttcatctacaaatcatcgcctggc
agcgatcaattttggcctacccaccttgccacctctttgtgttccggcgacgcttctgct
atccagtctcagagtgcagacgacaagcgttttctcatcttggaaaccaactacaaaatt
tacgcatatacttcaaacgagctcgagatcgccatccttaacctctttgttgacattcgt
attcggtaccccaacctcgttgtaggaaaactcgaccgtcagcacgttaaagccgccatg
gaaaagggtatctcagcggggcagatcatcgcctacttgtccagtcatgcccatccacaa
atgtacaactcccccccaccattattacatcccaccatcgtcgatcaacttcatttatgg
gatcgagagaggaataggttacagacggaagagaccgttatgtacgaattcttcagcaaa
gagctcttcgacgatactgtcaatgaagccaaagcaaatgcagctctacagcatgccgcc
acgtctcaaaaactattattcatcgagccgcatacgaagcctgcgatcacagaatttgtc
aagcaaagacagaacgtccttagagggggctattag
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