Caloenas nicobarica (Nicobar pigeon): 135989176
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Entry
135989176 CDS
T11056
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04010
MAPK signaling pathway
cnic04120
Ubiquitin mediated proteolysis
cnic04140
Autophagy - animal
cnic04144
Endocytosis
cnic04517
IgSF CAM signaling
cnic04620
Toll-like receptor signaling pathway
cnic04621
NOD-like receptor signaling pathway
cnic04622
RIG-I-like receptor signaling pathway
cnic05132
Salmonella infection
cnic05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135989176 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
135989176 (TRAF6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
135989176 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
135989176 (TRAF6)
04140 Autophagy - animal
135989176 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
135989176 (TRAF6)
04621 NOD-like receptor signaling pathway
135989176 (TRAF6)
04622 RIG-I-like receptor signaling pathway
135989176 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
135989176 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
135989176 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135989176 (TRAF6)
04121 Ubiquitin system [BR:
cnic04121
]
135989176 (TRAF6)
Enzymes [BR:
cnic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135989176 (TRAF6)
Membrane trafficking [BR:
cnic04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
135989176 (TRAF6)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
135989176 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
Sina_ZnF
zf-RING_5
SlyX
PspA_IM30
RING_XB3-XBAT31
TRAF3_RING
CCDC18_1st
zf-RING_11
DUF4455
Med21
CENP-F_leu_zip
DUF1664
HAP1_N
DUF16
PMD1-like
U-box
CCDC170_1st
ATG16
CEP104_ZnF
Spc29
DUF2247
HMMR_N
DUF8221
DUF7607
ADIP
ZapB_rel
DUF7310
DM
Motif
Other DBs
NCBI-GeneID:
135989176
NCBI-ProteinID:
XP_065491897
UniProt:
A0A7K6TFG4
LinkDB
All DBs
Position
5:47158426..47182181
Genome browser
AA seq
545 aa
AA seq
DB search
MSLLYSDNSCGAQDVESGCCAAMASACSVGAKEDSISISSGTGNPPSSFTEEPQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPIDNEILLENQLFPD
NFAKREILSLTVKCPNKGCSTKMELRHLEDHQLQCDFSTVECPQCQGAFQKNHLKEHMTQ
ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV
PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL
FSHVSHTAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTVRSL
EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL
PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL
AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQARS
TDGAM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctatatagtgataacagttgtggagcccaagacgtggaaagtggctgctgt
gcagccatggccagtgcctgcagtgttggagcaaaagaagacagcataagcatcagcagt
gggactggaaaccctccaagttctttcacagaggaaccacaaggatatgatgtggagttt
gatccgcccttggaaagtaaatatgaatgtccaatctgtttgatggctcttcgggaagca
gtgcagacaccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat
gcaggtcacaaatgtccaatagacaatgaaattctgctcgaaaatcaactttttcctgac
aactttgctaaacgggaaatcttgtcattaacggttaagtgtcccaacaagggctgcagt
acgaagatggagctgaggcatttagaggaccaccagttgcagtgtgatttttccactgtg
gaatgcccacagtgccaaggagccttccagaagaaccatctgaaagagcacatgacgcag
gagtgtccgaggcgccaagtctgttgtccaaactgtgccacatctatggcctatgaagat
aaagagcttcatgaccaaacctgcccacttgccaatgtattttgtgaatattgcaacaca
gtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccggtg
ccatgtttttacagtgcttttgggtgtcctgaaaagatgcaaaggaatgaactggcacga
catatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc
agtgttactgctacaaatcctgtacctttcatcaatggcctaccctttgagcctgccctc
ttctcacatgtgtcacacactgcatatgattgtaatccagaagttgaaaacttcaaagaa
actattcagcagctggaaggtcgtctggtaagacaagatcaccaaatcagagaactcatt
gctaaaatggagactcagaacactcatatggcagaactcaaacgtactgtccgcagtttg
gaggggaagattactgaaatggaggcacagcaatgtaatggtatttatatctggaagatt
gagaacttcagtggacttcagaaagcccaggaagaagagagacctgttgtgatgcacagt
cctggcttctatactggaaagcccggatacaagctgtgtttgcgcctgcacattcagtta
ccaaatgctcagcgttgtgctaattttatatctctgtttgtccacactatgcagggagaa
tatgacagccatctgccttggccttttcaaggcactatacgactttctattttggatcaa
tcagaaggccctgaaaggcagaatcatgaagaagtaatggaagccaagccagaattacta
gctttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg
cacctgcaaaccttgaaacaaagaaccttcgtaaaggatgacacccttctggtgcgctgt
gaagttctaacgcgtctagatttaaacagtctccgcagagaaggatttcaagctcgcagt
acagatggagctatgtag
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