Caloenas nicobarica (Nicobar pigeon): 135993987
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Entry
135993987 CDS
T11056
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135993987 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135993987 (LIG4)
Enzymes [BR:
cnic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135993987 (LIG4)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135993987 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
C9orf72-like
mRNA_cap_enzyme
Tox-REase-9
DUF2948
Motif
Other DBs
NCBI-GeneID:
135993987
NCBI-ProteinID:
XP_065500310
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All DBs
Position
1:154863342..154867772
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AA seq
912 aa
AA seq
DB search
MASTPALQPSPKKTVASRVPFADLCSTLERIQKCNSRPEKTKYFKDFLGSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIVKDLKLGISQQTIFSIFHPDALELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLAHEILTKRYEILSSVFTPLTGRIHVVHKKNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRRDPP
SNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SAMLEDLRSKAEGKLASKHLHIEEYDEPQEKKRKTVSKVRKIIGIAEQFKAPDLSNVNKV
SNMFEDVEFCVMTGMGKYTKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFETKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADADVTQLK
EVFSRVKDNKVMPLDMIAELEERYSWNSCRLSIFRGNTIYVDCYAVVNEPRTKIPGTTLS
IRALELRFYGAIVVSHLEEGISHVVIGDDHSRVKEMKSLRRTFGIKFKIVSELWVTESVE
EGALKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacctgcattgcagccttctcctaaaaagacagtggcctctcgtgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtgtaactctcgtccagagaaa
accaagtacttcaaggatttcctgggttcctggagaaagttccacgatgctcttcatcaa
aaagagaaagacgtcacagattctttttatccagcaatgcgacttattcttccacagctg
gaaagagaaaggatggcatatggaattaaagaaacgatgcttgcgaagctgtatattgaa
ctgctgaatttaccaagagatggaaaagatgctgcaaagcttttaaattacaggacacct
gctggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgcgata
gctaataacaatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccggatgattgtaaaggatctgaag
cttggtattagtcaacaaactatattttctatttttcatcctgatgctcttgaattacac
aacgtcacaactgatttggaaaaagtttgcaggcaactgcatgatccctcggtttctctt
agtgatgtttctatcatgttattttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagctgcacaaagatggagatgtgtataaatatttttcccgaaatgga
tttgactatactcagcagttcggcgcttccccccttgatggttcattaacgccatttatt
cataatgtatttaagagcaatatacagaactgcattcttgatggtgaaatgatggcttac
aatcctgagacgcaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaggactctgacctgcaaacctgcttctgtgtgtttgacgtattgatggttaacgatcag
aagttggctcatgaaatactgaccaaaagatatgaaatcttaagtagcgtatttactccc
ctaacaggcaggatacatgttgtacacaaaaaaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagccggacaaacgtggggaaggctggttaaaaatcaagccagaatatgtt
aatgggctgatggatgaactagaccttttaattgttggtggttactgggggaagggctct
cgtggtggaatgatgtctcattttctgtgcgctattgcagagacaccccctccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctatactatgaaggaatta
tacgatctaggtttgaaactggctaaacactggaagccctaccataggagggatcctccc
agtaatattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtatgagtgcatgact
tcagccatgttagaagatctcagaagcaaagcagaagggaagctggcatctaaacacctt
catatagaggagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgagg
aagataattggaatagctgagcaatttaaggctcccgatctttctaatgtaaacaaggtc
tcaaatatgtttgaagatgttgagttttgtgttatgacaggaatgggaaaatacacaaag
tctgaactggaaagcaggatagccgaatgtggtggcagcgtggtacagaacccagggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttgaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacaccaaagaacattttgct
cgtgagtatgattgttacggagacagctacacagcagatgcagatgttacacaactcaag
gaagtgttctcaagagtgaaagacaataaggtgatgcctttggacatgattgcagagtta
gaagaacgttattcgtggaacagctgtcggctcagtatattcagaggaaacactatttat
gtggattgttatgctgttgttaatgagcccagaaccaaaatccctggaacgacactgtca
attagagctttggagctccgtttttatggtgcaatagtagtctctcaccttgaagagggc
atctcccatgttgttataggagatgatcattcccgggtaaaagagatgaaatcactcaga
agaacatttgggataaaatttaaaattgtatctgagctgtgggtaacagagtcagtggag
gaaggagccctaaagaatgaaaatcagtacttaatctaa
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