Caloenas nicobarica (Nicobar pigeon): 135998121
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Entry
135998121 CDS
T11056
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cnic04040
]
135998121 (SCN4A)
Ion channels [BR:
cnic04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
135998121 (SCN4A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
135998121
NCBI-ProteinID:
XP_065507302
LinkDB
All DBs
Position
24:complement(2177210..2220721)
Genome browser
AA seq
1837 aa
AA seq
DB search
MANLPHIPGPENLRPFTPASLAAIEQRILEAEALKIKRQQVELPEEEELKPSSDLEAGKN
LPLIYGDPPLELIGTPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYLLGPFHPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTMSNPPAWSKNVEYTFTAIYTFESLIKILSRGFCI
DNFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPPLNDTLLGDMGLDNDTLTN
ATLYDNFIDGNFTSNFTSNSTFDFEAYINDEANFYFLEGALDALLCGNSSDAGKCPEGYQ
CMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRSAGKTYMIFFVVVIFLG
SFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKHQEEQEKLLQDHRSSSG
SLPSGVAGKDGDSDLNSDQEKAKDGKGQVVPKVVLERSATVIDFNQTNELEKSDHNHLTV
GNQDGPGLEKRVGSAISVISNTVEELEEAHQKCPSWWYKFAHMFLVWNCCPLWVKLKEFV
KLVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEMVLKLIA
LDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIK
IIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYSECVCKISLDCTLPRWHMHDFFHSF
LIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADSLA
ASDDDGEMNNLQIAIGRITRGIDFVKTSIIMLLRRLWKGKKVAPEEEQEHSKRENSVLNH
VDTGQEPKSEYLDRVTGKEHYLMDELDHMNFINNPNLTVQVPIASEESDLYEETSTQSDT
EDAKNPLSSDNASSMCSTVDYKPPLPEEEEVAEEAEESNEPEECFTEACVKRFPCLYVDI
TSDRGKVWWNIRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRTILEYAD
KVFSYVFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLTANWLGYSELGAIKSLR
TLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRC
VNTTTGELFDITVVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDI
MYAAVDSREIEEQPQYEINIYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKD
IFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKFQGMVFDFVTKQVFDITIMILICLNMVT
MMVETDDQSELKTSILYKINLVFIVIFTGECVLKMFALRYYYFTIGWNIFDFVVVILSIL
GIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLL
FLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSG
PPDCDPELENPGSSIKGDCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATEESS
EPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDLPMV
AGDKIHCLDILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPITTTLKRKHEEV
CATKIQRAFRRYLLRRSVKQASYMYRHSKDEDALKEDAPEKEGLIATKMQEIYGNSGTDV
GTAPAFGLAPVAGSETRNAPGEAKTQDKERVVKESLV
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctgccgcacatcccgggccccgagaacctccgtcccttcacccccgcctcg
ctggctgccattgagcagcgcatcctcgaggcagaggctctcaagataaagcggcagcaa
gtggagctgccagaggaagaggagctcaagcccagcagtgacctggaagccgggaagaac
ctgcctcttatctatggtgacccaccgctggagctcatcgggacacccttggaggacctc
gacccgttctacaaggataagaagacgttcatagtcctcaacaaagggaagtccatcttc
cgcttctcagcaacccctgccctctacctgctgggccccttccaccccatccgcagagga
gccatcaaagtgctcatccattcattattcagcatgttcatcatgatcacaattttaacc
aactgcgtgtttatgacgatgagcaaccccccagcgtggtccaagaacgtggaatacacc
ttcaccgcaatatacaccttcgagtccctcatcaagatactgtcgagaggcttctgcatc
gacaacttcacattcctgcgtgacccgtggaactggctggacttcatggtcatctccatg
gcctacatcacagagttcgtggacctggggaacatctctgctctcagaaccttccgtgtc
cttcgtgccttgaaaaccatcactgtgataccagggctgaagacaattgttggggctctg
atccagtcagtgaagaagctctcggatgtcatgatcctcacagtcttctgcctgagcgtc
ttcgccctcatcggcctccagctcttcatggggaaccttcggcagaagtgtgtgcggtgg
ccccccctcaatgacaccctgttgggggacatggggctggacaatgacacattgaccaac
gcaactctctacgacaacttcattgatggcaacttcaccagtaacttcaccagcaacagc
acttttgattttgaggcctacatcaacgatgaagccaatttctactttctggaaggagca
ctcgatgccctgctctgtgggaacagcagcgatgctgggaagtgccctgaagggtaccag
tgcatgaaggcagggaggaaccccaactacggctacaccagctacgacaccttcagctgg
gctttcctggccctcttccgcctcatgacgcaggactactgggagaacctcttccagctg
acgctgcgttcagcagggaaaacgtacatgatcttcttcgtggtggttatatttcttggt
tccttctacctcatcaacctcatcctcgccgtggtggccatggcttatgcagaacaaaac
gatgccacaatgctggaggagcagcagaaggaggaggaatttcagcagctcatggagcag
ctgaagaagcaccaagaggagcaagagaagttgttgcaggaccatcgatccagcagcggt
tccctgcccagcggggtggccgggaaggacggtgactcggacctgaacagtgaccaggag
aaggcaaaggacggcaaagggcaagtggtccccaaggtcgtgctggagcgctcagctacg
gtgatcgatttcaaccaaactaatgagctggagaaatcagaccacaaccatctcaccgtg
ggcaaccaagatgggccaggcctggagaagagggtggggagcgccatcagtgtcatctcc
aacacggtggaagagctggaggaagctcaccagaagtgcccatcctggtggtacaaattt
gcccacatgttcctggtctggaactgctgccctctgtgggtgaagctgaaggagtttgtc
aagctggtggtcatggaccccttcgtggacttgggcatcaccatctgcatcgtgctcaac
acacttttcatggccatggagcattaccccatgacagaggagttcgagaacgtgctgact
gtggggaacctggtctttacggggatcttcacggcagagatggtcctgaagctcatcgct
ttggacccctacgagtatttccagcagggctggaacatctttgacagcatcatcgtcacc
ttgagcctggtggagctgggcttggccaacgttcaagggctctctgtgcttcgctccttc
cgcttgctgagggttttcaagctcgccaagtcctggcccaccctcaacatgctcatcaag
atcatcggcaactcagtgggcgccctggggaacctcacactagtgctggccatcatagtc
ttcatcttcgccgtggtggggatgcagctttttgggaagagctacagtgagtgcgtgtgc
aagatctccctcgactgcacgctgccccgctggcacatgcacgacttcttccactccttc
ctcatcgtcttccgcatcctctgcggggagtggatcgagaccatgtgggactgcatggag
gtggccggccagaccatgtgcctcatcgtcttcatgatggtcatggtcatcgggaacctc
gtggtgctgaacctcttcttagctttgctgctgagctccttcagcgccgacagcctggca
gcatctgacgacgatggagagatgaacaatttgcagatcgctatcggcaggatcactaga
gggatcgactttgtgaagacctctatcatcatgctgctccgcaggctgtggaaggggaag
aaggtggcaccagaggaagagcaagagcacagtaagagagaaaactctgtgctgaaccac
gtggacacgggccaggagcccaagtcggagtatctggacagagtcactggcaaagagcat
tatctcatggatgaactggaccacatgaatttcattaacaaccccaacctgacagtgcaa
gtgcctatcgcctcggaggagtccgacctctacgaggagaccagcacccaatccgacacc
gaagatgccaagaatcccctctccagcgacaacgcgtcatccatgtgcagcactgtggat
tacaagcccccgctgccggaggaggaggaggtggcagaagaggcagaggagagcaatgag
cccgaggagtgcttcaccgaagcctgtgtgaagaggtttccctgcctctacgtggacatc
accagcgacagagggaaggtttggtggaacatccggaaaacctgcttccgtatcgtggag
cacgactggtttgagaccttcatcgtcttcatgatcctcctcagcagtggggcgctggct
tttgaggacatctacattgaacaacgcaaggtgatacgcaccatcttggagtacgctgac
aaagtcttctcctacgtctttgtcattgagatgttgctcaagtgggtggcctatggcttc
aaggtgtacttcaccaacgcgtggtgctggctggatttcctcatcgtcgatgtttccatc
atcagcctgacagcgaactggttgggatactccgagctgggagccatcaagtccctgcgg
acgctgagggctctgagaccactgcgtgccctctccagatttgaaggcatgagggtggtg
gtgaacgccttgctgggcgccatcccttccatcatgaacgtcctgctggtctgcctcatc
ttctggctgatattcagcatcatgggggtgaacctctttgcggggaagtactaccgatgt
gtcaacaccaccacgggcgagctcttcgacatcaccgtggtcaacaacaagagcgactgc
atggccctcctccacaccaacgaggtcagatgggtcaacgtcaaggtcaacttcgacaac
gtgggcttgggatacctctccttgctgcaggtggcgaccttcaagggctggatggacatc
atgtacgctgccgtggactcgcgcgagattgaagagcaaccacagtacgagatcaacatc
tacatgtacatctactttgtcatcttcatcatctttggtgccttcttcaccctgaacctc
ttcatcggcgtcatcatcgacaactttaaccagcagaagaaaaagtttggaggcaaagac
atcttcatgacggaagagcagaagaaatactacaacgccatgaagaagctcggctccaag
aaaccccagaagcccatcccgaggccatcgaacaagtttcaagggatggtgttcgacttt
gttaccaagcaggtgtttgacataaccatcatgatcctgatttgccttaacatggtgacc
atgatggtggaaacggatgatcagagtgaactcaaaacatctattctctacaagatcaac
ctagtcttcattgtcatcttcactggagagtgtgtgctcaaaatgttcgccttgcgctac
tactacttcactattggctggaacatctttgactttgtggtggtcatcctctccatctta
ggtatcgtcctctcagacatcatagagaagtactttgtatcacccaccctcttcagggtc
atcaggctggcaaggattggccgtgtcctccggctgatccggggggcaaaaggcatccgg
accctcctgtttgctctgatgatgtccctgcctgccctgttcaacatcggtctcctgctt
ttcctcgtcatgttcatctactccatctttggcatgtccaacttcgcctatgtaaagaaa
gagtcggggatcgatgacatcttcaactttgaaacttttgggaacagcatcatctgcctc
ttccagatcacaacgtcagctggatgggatggcctcctcaacccaatcctgaacagtggt
ccccccgactgtgaccctgagctggaaaaccctggcagttctataaaaggggactgtggc
aatccgtccatcggcatcttcttcttctgcagctacatcatcatctcctttctcatcgtg
gtgaacatgtacattgccatcattctggagaacttcaacgtggccacagaggagagcagc
gaacctctttgtgaagatgattttgaaatgttttatgagacctgggagaagtttgaccca
gacgccacccagtttatcgcatacagcaccttgtctgactttgtagacaccttacaggag
ccactcaaaattcccaagccaaacaagatcaagctcatcaccatggatctaccaatggtt
gctggggacaaaatccactgtctggatatcctctttgccctgactaaggaggtcctggga
gactcaggagagatggacgccttgaaggccaccatggaggagaagttcatggccgcgaac
ccctccaaggtttcctacgaacccatcaccaccactctgaagaggaaacatgaggaggtc
tgtgccacaaaaatccagagagctttccggaggtacctcctgagacgctcggtgaagcag
gcgtcctacatgtaccggcacagcaaggacgaggacgccctgaaggaggacgcgcccgag
aaggaaggtctgatcgccaccaaaatgcaggagatttatgggaacagtgggacagacgtg
gggacagcccctgcctttggtcttgcacccgttgctggctcagagactcgcaatgctcct
ggtgaagcaaaaacacaggataaggaacgtgttgtgaaggagtcgctggtataa
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integrated database retrieval system
