Caloenas nicobarica (Nicobar pigeon): 135998222
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Entry
135998222 CDS
T11056
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03440
Homologous recombination
cnic03460
Fanconi anemia pathway
cnic04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135998222 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
135998222 (BRCA1)
03460 Fanconi anemia pathway
135998222 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
135998222 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cnic04121
]
135998222 (BRCA1)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135998222 (BRCA1)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135998222 (BRCA1)
Enzymes [BR:
cnic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135998222 (BRCA1)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135998222 (BRCA1)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135998222 (BRCA1)
Multi subunit type E3
BRCC complex
135998222 (BRCA1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
135998222 (BRCA1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
135998222 (BRCA1)
BRCA1-A complex
135998222 (BRCA1)
BRCA1-B complex
135998222 (BRCA1)
BRCA1-C complex
135998222 (BRCA1)
BRCA complex
135998222 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
135998222 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
BRCT_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-Nse
zf-RING_5
Zf_2nd_IFT121
TRAF3_RING
zf-ANAPC11
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
135998222
NCBI-ProteinID:
XP_065507447
LinkDB
All DBs
Position
24:3618110..3635171
Genome browser
AA seq
1762 aa
AA seq
DB search
MDLSMIGIGDVQNVLLAMQKNLECPICLDVVKEPVSTKCDHIFCRFCMFQLLSKKKKGMI
QCPLCKTEVTKRSLKENSRFKQLIEGLLETIRAFELDTGVKFLNSHHIPKTSTEATAAEL
LCKENSVVQSKGFRNRNKSAKGNEQENRTLEAHVDAPLTDTGVKRSSLRNKKQKCDSEKG
IYIELGSDSSEELFKQANNTGLEDKEALQISSQENTEELKSAEKGNEYSCTTQPEKLGAK
EVVLPNVKGESDFSKEGLSKKRTWSINEYAKPAPGDVTEYQSSPLNVLPTELTEQCDSPL
RNGDTSVFKNTEEMDAEQTPCNSNSEEFDLKESSESRLDKSKEIDIAQSVEAVEMDEPEN
DSLNEKELPLEKLLQPETLHCAALNQVSRKRLKRSIQKVNEWFSKSEEIPSRSFSQDDSA
GATDVSGEGDTSLSDKESCVSQKTDPMVNSKEIPVAEGNKRWSKETADSIKDKIFGKTYK
RERKSNPPIIFRDVLPTEKKEDAAADKSWNNSSKDRLKRKRKTVSVLRPEDFIKKKDVEE
ADGCPQTVTLCIGDAEKKRCEESFAVNESHLSENKEDNTVAEVEEGGGSIWKKAAEKVTG
KHCDVELDLNNSDQKSTKKNGSAAKRSRRSTRTMCALQLVVDRNSLSPDAAEPQIDSYPS
SEEPRKADSEQRQVRRSRRIQLLSEEMTKEMGKGVIKGAKKYESDREGSFSGVQRNVLVH
ASECKEQHEPRGMVSDQPLADLKDGDLEANEMQISLKNSLDAAETGEILLNPTSCCQHSN
CSSFAPNTDSQESEIQGSPLLLEPPSTTSHLTEEMSESLTAFPRDSRHDTLKVPGDLKTE
KLPVAKNGLEVTEEVEDSELDTQYLRNMFRHSKRLSFSLYPTPMKAHAVGDAASETLKRS
CADQGENKRSKYLKPESLQEEKTAESLSRVCGKEPLKANESCVSPVTCFVDDAECAQAED
HQEDVSQAEDHQEGVSQVANQGNPTPIGMGTARTEGKNRLQKGEQENEKTLSTGIGIESE
LRQNPVKSKRSQSDQGNTEEQVFKRADLNTVDEMCISSESDQAGKAEGVDGKAPLLHFQY
KSMICPVTCQQRPAEFSCEGTRKKSSKRERKQVKGNEEAATQTAGTGMAEGLVTQALEEP
FKGNSDFTGSSETPDGLLCSDGDIEENTSFSESDMRERSAVFMKSSNNALVKERHNRNVS
SKPRARGIPRSRRRVRKLQSSDEESSEDEDLPCFQMLINGKSASTPLQTNKQVPPVVESS
VSPVMLPPRGSNDDNNAQKMLGAAPSSGCVSPSQESECSVNLFSSQSNVSEESVDGAQEL
KNPSVQVHPSKQVSTVNEGKEASPSCNKGLKRSKTNSKDKCQEDQNMGANPGEASESDSE
TSNVEDSCDPFSQGEILTTQQKNIMQNNLKKLQQEMAELEAVLEQHGSQDCEFLPVHRNL
PRSSSEGTLGMEQMRQERENAAEQNCGTRLNSASVLPNISGNGTRSPSKSSSSVRLLNPQ
TAEATTSSVAAPNADKSWTQERKSRSSCFPTSILHNAAGKESATSPVVTNRKEMSIVASG
LTQSEHVVVQKFARKTRSTLSNHFTEGTTHVIMKTDKELVCERTLKYFLGIAGRKWVISY
QWVIQSFKEGRILDEENFEVRGDVINGRNHQGPRRARQALTDKIFKDFEICCYGPFTDMA
TEHLEWMVELCGASVVKQPHLFTRTRNSTAVVVVQPDAWMEDTDYGVIQQKTNVAMVTRE
WVLDSVACYKCQELDTYLVSQG
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atggacttgtccatgattggtattggagatgtacaaaatgtgcttttggcgatgcagaag
aacttggagtgcccaatatgcttggatgtggtaaaagagccggtttcaacaaaatgcgat
cacatattctgcaggttctgcatgttccagctcctcagcaaaaagaagaaaggcatgata
cagtgtccgctgtgcaagactgaagtcaccaagagaagtctgaaagaaaattccagattt
aagcaactaattgaaggattgctggaaactatccgtgcatttgagcttgacactggagta
aagtttttaaacagtcatcacattcctaaaacatccacagaagccactgctgctgagctc
ctgtgtaaagaaaattctgtcgtccaaagtaagggcttcagaaacaggaataaaagtgct
aaaggaaatgaacaagaaaaccgcaccttggaagctcatgtggatgcaccgcttacagat
actggggtcaaaaggtcttccctaagaaacaaaaagcagaaatgcgattctgaaaaaggg
atttatatagagctcggctctgattcatctgaagagctttttaaacaggcaaacaatact
gggttagaagacaaagaagcgcttcagatttcgtctcaagaaaacaccgaagaacttaag
agtgctgagaaggggaatgagtattcttgcactacgcagcctgaaaagctgggtgctaaa
gaagtagttctacccaatgtcaaaggtgaaagtgatttctcgaaggaaggtttgagcaag
aaaaggacttggagcatcaatgaatatgccaaacctgccccaggggatgtgactgaatac
cagagttctcctttaaatgttcttcccacagagctcacagagcagtgtgacagtccctta
aggaatggggacacgtctgtctttaagaacacagaagaaatggatgcagagcaaactcca
tgcaatagtaatagtgaagagttcgacttaaaagagagctcagagagcaggttggataaa
agcaaggaaatagatattgcacaaagcgtggaagctgtggaaatggacgaacctgagaat
gattctctcaatgaaaaagaacttcctctggagaagctgcttcagccagagacacttcac
tgcgctgccctgaatcaagtctctaggaagagactgaagcgaagcattcagaaagtcaat
gaatggttttcaaaaagcgaggagattccgtctcgcagtttttcccaggatgattctgct
ggagcaactgacgtttcaggtgaaggagacacatctttatcagataaagaatcctgtgtt
tcacaaaagactgaccctatggtcaattccaaggaaattccagtggctgaaggaaataag
agatggtcaaaagaaacagcagatagtatcaaagacaaaatatttgggaaaacatacaag
agagagaggaagtcaaatccccctattatctttagagatgttttacctactgaaaaaaag
gaagatgcagctgctgataagtcctggaataattccagcaaagacagactaaaacgaaaa
aggaagactgtcagtgtcctgcgacctgaggatttcatcaagaaaaaagatgtagaggag
gcagatgggtgccctcaaaccgttaccttgtgcattggagatgctgaaaagaaaagatgt
gaggaaagctttgctgttaatgagagtcacctctctgagaataaagaggataatacagtg
gcagaagttgaggaaggaggaggatccatatggaaaaaagctgctgaaaaggtgactggc
aagcactgtgacgtggagctagatttgaataactctgatcagaaaagcactaaaaaaaat
ggttctgcagcaaaaagaagcaggcgttctactagaaccatgtgtgccctacagttagta
gtggatagaaactctctgtcccctgatgcagctgagccccaaatcgatagttatccaagc
agtgaagaaccaaggaaagctgattcggagcaaagacaagtcaggcgcagcaggcggatt
cagctactttctgaagaaatgacaaaagaaatgggaaaaggagtaattaagggagcgaaa
aagtatgagagtgaccgcgaaggatctttctctggagtccagaggaacgtgttagttcac
gcttctgaatgcaaagagcagcatgagccccggggtatggtgagtgaccagccactcgct
gatctgaaggatggggatctggaagcaaatgaaatgcagatcagtctaaagaattcattg
gatgctgcagaaactggagaaattctcctcaatcctacatcttgttgtcagcactcaaat
tgtagttccttcgcacccaatacggattctcaagaaagtgaaatacaaggaagccctttg
ctcctagagccgccttcaacaacttcccacctgactgaagagatgtctgaatctcttact
gcttttccccgggatagcagacacgatacgctaaaagttccaggagacttaaaaactgaa
aagttgccagtggctaaaaatggtttggaagtgaccgaggaagttgaagatagcgagtta
gacacacagtatctgcgaaatatgtttaggcattcaaaacgcctgtcatttagcctttat
cctactcctatgaaggcacatgcggtaggagatgctgcttctgaaactctaaagagatca
tgtgctgatcagggagaaaataagcgtagcaaatatttaaaaccagaaagcctgcaagaa
gagaaaactgctgagagcttgagtagggtttgtgggaaagagccacttaaagccaatgaa
tcttgtgttagtcctgtgacttgctttgttgatgacgctgaatgtgcacaggcagaggat
catcaagaagatgtttcacaggcagaggatcatcaggaaggtgtttcacaggttgcaaat
caagggaatccgacaccgatcggaatgggtaccgctaggactgaaggcaaaaacagattg
cagaaaggagagcaggaaaatgaaaagactttgtcaactggcatagggatagaaagtgag
ttgagacagaatccagtcaaaagtaagagaagccaaagcgatcagggtaatacagaagag
caagttttcaaaagagctgatttaaacacagtcgatgaaatgtgcatcagttcagaaagc
gatcaagcaggaaaggctgaaggtgttgatggcaaagcaccgctactacattttcagtac
aaatcaatgatttgtcctgtaacgtgtcagcaaagacctgctgagttcagctgtgaaggc
actcggaaaaaaagtagcaaaagagaaagaaaacaggtaaaggggaatgaagaagcagca
actcaaactgctggcacagggatggctgagggtttagttacacaggctctagaagagcct
tttaaagggaatagtgattttacaggttcatctgagacccctgatggcttattgtgctct
gacggtgatattgaggagaacaccagcttttctgaaagtgatatgagagagagatctgct
gtgtttatgaaaagtagtaacaatgccctggtaaaagaacgacacaatcgaaacgttagt
tctaagcccagagctcgaggtattccaagatctcgaagaagagtgcggaaactgcaatct
tcagatgaagaatctagcgaggatgaagatttgccgtgttttcagatgttaataaatggc
aagtcagcaagcacacctttgcagaccaataaacaagtgccacctgtggtagagtcttca
gtaagtcccgtcatgttgcctccccgtggaagtaacgatgacaataatgcgcagaaaatg
ctcggagctgccccaagtagtggatgtgtttcgccaagccaggaatctgaatgctccgtc
aacttattttcctcccagtccaacgtgtctgaagaatcagttgatggagcacaagagctg
aagaatccgtcagtacaagttcatccatccaaacaagtgagcacagtgaatgagggtaaa
gaagcttctccaagttgtaataaagggctgaagagaagcaaaactaactctaaagacaaa
tgccaggaagaccaaaacatgggagcaaacccaggtgaagcatctgaatctgatagtgag
acaagtaacgtagaagattcatgtgacccgttctctcagggtgaaatccttactacacag
cagaagaatattatgcaaaataacctaaaaaaacttcagcaagaaatggctgaactcgaa
gcagtgctagagcagcacggaagtcaggactgtgaatttttacctgtccatagaaacctg
ccacgttccagtagtgaaggaacacttggaatggaacaaatgagacaagaaagagaaaat
gcagctgagcagaattgtgggaccaggctaaacagtgcatctgtcttaccaaatatctct
ggaaatgggaccaggagtccaagtaaatcttcctcctctgtgaggcttcttaaccctcaa
actgcagaagcaaccactagttctgttgcagctccaaatgctgataaaagctggactcaa
gaacgtaaatcgagaagttcatgttttccaacatctattctgcacaacgcagctgggaaa
gaaagtgcaacgagtcccgttgtgaccaacaggaaagaaatgtcaattgtggcatcgggt
ctgactcaaagcgaacatgtggtcgtccagaagtttgcgagaaaaactcggagcacttta
tctaatcacttcactgaaggaacaacccatgtcataatgaaaacagacaaggagctggtg
tgtgaacggacgctcaagtactttctgggtatcgcaggaaggaaatgggtcattagttat
cagtgggtcattcagtcttttaaagaaggaaggatactggatgaggagaactttgaagtt
cgaggagacgtaatcaacgggagaaaccaccaaggtcctaggagggctagacaggctctg
actgacaagatctttaaagactttgagatctgttgctatggacctttcactgatatggct
acagaacatcttgaatggatggtggaactttgtggtgcctctgtggtgaagcagcctcat
ctgttcacacgcacaagaaattctactgctgtcgtggttgtgcagccagatgcttggatg
gaagacacggattatggagtgatccagcaaaaaaccaacgttgccatggtgactcgagag
tgggtattagacagcgttgcgtgctacaagtgccaggagttggatacttacctggtgtcg
caaggatga
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integrated database retrieval system
