Caloenas nicobarica (Nicobar pigeon): 136002544
Help
Entry
136002544 CDS
T11056
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04514
Cell adhesion molecules
cnic04520
Adherens junction
cnic04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
136002544 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
136002544 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
136002544 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
136002544 (PTPRF)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cnic04515
]
136002544 (PTPRF)
Enzymes [BR:
cnic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
136002544 (PTPRF)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
136002544 (PTPRF)
Cell adhesion molecules [BR:
cnic04515
]
Immunoglobulin superfamily
Type II RPTP family
136002544 (PTPRF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
DSPc
V-set
Y_phosphatase3
C2-set_2
PTPlike_phytase
PTP-NADK
Ig_5
Insulin_TMD
Fn3_PTPRU
DUF3377
ICAM_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
136002544
NCBI-ProteinID:
XP_065513743
LinkDB
All DBs
Position
Z:98091343..98474081
Genome browser
AA seq
1901 aa
AA seq
DB search
MVPNFCVPVLTVSAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSNHE
VMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIVQSANYTCVAIS
SLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKPKSLEGQ
FQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSPPLKVQA
RMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVGSLITGT
TYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPASQERITK
YELLYWEGEDGAQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPTIEARTAQ
STPSAPPQEVECVSTSSTTIRVSWVPPPVQSRNGVITQYSIAYQAVEGDDNTKHVVDGIG
REYSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEVESVNST
AIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPQGQPVIKDVMLSEAQWRAEDSVDHETV
IGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTALIQWHPP
KEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYLFKLSAKNRAGPGEE
FEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWDPPVLAERNGKIVNYTVVYRDINSQQD
LVNITKDTSITLTNLKPDTTYDIKVRARTNKGVGPLSPSIQSRTMPVEQVFAKNFRVNAV
MKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVLMNRGSS
AGGLQHLVSIRTAPDVLQSKPIATNKYMQEGKFTLALPKVQTTVPVRWYYIVVVPADQST
SSPTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFTLGDEKN
YKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPEMLWVMG
PVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSLLAHSSDPVEMRRLNYQTPGM
RDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIA
YDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETLSDFWRMVWEQRTATI
VMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTLLDTVELATYTVRTFALYKNGSSEKREL
RQFQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPLVVHCSAGVGRTGCFIVIDAMLE
RMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAATCGNTEVPARNLFAHIQK
LTQVPPGESVTAMELEFKLLANSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPI
RGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGR
EKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQ
GVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVD
MFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgcgtcccagtactcactgtgtcagcagccatcctctgctgcttg
atgttgcctttagcaggagcagacagcaagccaacatttatgaaagctcctgaagatcag
attggaatttctggaggagtggcgtcttttgtgtgtcaggcgacaggagagcccaaacct
cgtatcacatggatgaagaaggggaagaaagtcagttctcagcggtttgaggttattgag
tttgatgatggatcaggatcagttctgcggatacagcccctgcgtgttcatcgagatgaa
gcaatctatgagtgcacagcaaccaatagtgttggggagataaacacaagtgccaaatta
acagtgctagaagaagaccacctccccgccggcttcccgaccattgacatgggcccgcag
ctgaaggtggtggaaaaggcccgcacagccacaatgctctgtgctgccagcggtaacccc
gatcccgaaatctcctggttcaaggacttcctgcccgtcgacactgcaaccagcaatggg
cgcatcaagcagctccgctcgggagctctgcaaatagagaacagcgaggagtcagaccaa
ggcaaatacgagtgtgttgcaaccaacagcgcaggaacccgctactctgccccagctaac
ctttacgttcgagtgcggcgtgttgctcctcgattctctatccctccgagcaaccacgag
gtgatgcctggggggagcgtgaacctcacatgcgtggcagtaggtgctccgatgccctac
gtgaagtggatggctggtgtggaggaactgaccaaagaggatgagatgcctgtcggtagg
aatgtcctggagctaaataacatcgtccagtctgccaactacacctgtgtggccatctcc
tcgctcggcatgatcgaagccacagcccagatcactgtcaaagcactgccaaaacctcca
acggagccattagtgactgaaacgacagctaccagcgtgaccctcacctgggattcaggc
aactctgaccccatttcatattacgtcatccaatacaagcccaaatccttggagggtcag
ttccaggaggtggatggtgtggcaacaacccgctatagcataggtgggctcagccccttc
tcagagtatgagttccgggtcatcgcagtcaataacattggcaggggtccccccagtgag
ctggtcgaggcccggacaggagaacaagctccttcaagtccacccctcaaagtccaggca
cggatgctgagcgccagcaccatgctggtccagtgggagcagccagaggagccaaatgga
cagatcagagggtaccgcgtttactataccactgacccacatctgcccttgagcatgtgg
cagaaacacaacacggacgacagccacctcaccaccgtggggagcctcatcacagggacc
acatacagcatccgcgtcctggcctttacttcggtgggcgacgggcctccctcggacatc
atccaggtcaaaacgcagcaaggggttcctgcccagccagctgacttccaggcagaagca
gagtctgatacccgcatcctgctgacgtggctgcccgcctctcaggagcgcattaccaaa
tacgagctgctgtactgggaaggggaggatggcgcacagcaaaaggtggagtttgaccca
acctcctcgtatgctgtggaaggtctcaaaccagacacactgtataagttccgtctgggt
gcccgctcagagctgggcgtaggagtctacacccccacgatcgaagccagaactgcccaa
tccaccccctccgccccaccccaagaagtcgagtgtgtaagcaccagctccactaccatc
cgggtaagttgggtgccaccgcctgtccagagccgcaatggggtcatcacccagtactcc
attgcataccaggcagtggaaggagatgacaacaccaagcatgtggtggatggcattgga
cgggagtactccagctgggagatcaaggacctggagaaatggaccgagtacaaggtgtgg
gtaagggctcacactgatgtggggccaggaccggagagcatccccgtgcacgtgcgcact
gacgaggatgtgcccagtgccccaccgcgaaaggtggaggtggagtctgtgaattcgact
gccatccgggtgagctggaagctgcccatctccaacaaacagcacgggcagatccgcggg
taccaggttacatacgtgaagctggaaaacaacgagccccaagggcagccagtgatcaag
gacgtcatgctgtcagaagcacagtggagagctgaggactccgtcgaccacgagacggtc
atcggaggcctgctgccagaaaccacctactccgtcaccgtcgctgcctacaccaccaaa
ggagatggtgcccgcagcaagcccaaagtcatcaccaccacaggggcagtcccggggaag
cccaccatgatgattagcacgacagccatgaacacagccctcatccagtggcacccaccc
aaggagatggtaggggagctgctgggttaccggctgcagtacagacgtcttgatgaggag
aagatgaacacgatagactttgggaagagagaccatcactacactgtgaccaacttgcac
aagggggccacgtacctcttcaaattgtctgccaagaacagagctggcccaggagaggag
tttgagaaggagatcactaccgcagaagacgtgccaagtggcttcccacaaaacctgcgc
gtggtgggtctcaccacttctaccacagaggttgcctgggaccccccagttttggcagaa
agaaatggcaagatcgtcaactacacagtggtatacagggacataaatagccagcaggac
ctggttaacatcaccaaggacacaagtatcactttgacgaatttgaagcccgataccact
tacgacatcaaagtgagggcccgcaccaataagggggttgggccgctcagccccagcatc
cagtcccggaccatgcctgttgagcaagtgtttgctaagaacttccgcgtcaatgccgtc
atgaaaacttctgtgttgctgagctgggaagtgcctgactcctataaatctgcagtgcct
tttaagattctgtacaatagccagagcgtggaggtggacggccactcgatgaagaaactc
ataagtgacctccagccagacacagactattcttttgtgctaatgaaccgtgggagcagt
gctggggggctccagcacctcgtctcaatccgcaccgctcctgacgtcttgcaaagcaaa
cccatcgccacaaacaagtacatgcaggaaggaaaattcacactcgcccttcccaaagtc
cagaccactgtgccagttaggtggtactacatcgtggttgtgccagcggatcagagcacc
agcagcccgactgctcggtggcggacacctgatgagatggagctggaccagctgctggag
gccataagccaagggagtcagagcaggcgccagcgacgccaggcagatagactcaagccc
tacattgctgctcaagtggatgtgctgcctgagaccttcaccttgggtgacgagaagaac
tacaaaggtttctacaacaagcccctgtctcaagacctgagctatcgctgcttcgtgctg
gcttctctggaggatggagacacgaagagatatgcagccagcccctactcggatgagatc
gtgatggaagtggcttcagcaaagcagcaggatgaaccggagatgctgtgggtgatggga
cccgtcctggctgtgatattaatcatcatcattgtcattgctatactcctcttcaaaaga
aaaagggcccactccccctcttccaaggatgagcactccatcggcctgaaggactcgctc
ttggcccactcctctgacccggttgagatgagacggctcaactaccagactccaggcatg
cgcgaccatccccccatccctgtgacggaccttgccgacaacatcgacaggctgaaagcc
aacgacgggctgaagttctcccaggagtacgagtccattgatccagggcagcagttcacc
tgggagaactccaacctggaagtgaataaaccgaaaaaccgctatgcaaacgtgatcgcc
tatgaccattcacgtgtcatcctgacctccatcgatggggtcccaggcagtgattacatc
aatgccaattacatcgacgggtatcggaagcagaatgcctacatcgccacgcagggacct
ctgccagaaaccctcagcgacttctggagaatggtgtgggaacagagaacagcaactata
gtcatgatgaccaggctggaggagaagtccagggtgaagtgtgaccagtactggccaagc
cgcggtacggaaacctacgggatgatccaggtgaccctgctggacacagttgagctggcg
acctacactgtccgcacctttgcattgtacaagaacggctccagtgagaagcgagagctg
cgacagttccagttcatggcttggcccgatcacggggtaccagaataccccaccccgatc
ctggctttcctgcgacgggtgaaggcctgtaacccgccggatgctgggcccttggttgtc
cattgcagtgctggtgtgggccgaactggttgcttcattgtcattgatgccatgctggag
cggatgaagcacgagaagaccgtggacatctatggccacgtgacgtgcatgcgctcccag
cgcaactacatggtgcagacagaggaccagtacatcttcatccacgaggccttgctggag
gcagccacgtgtggcaatactgaggtgcctgcacgcaacctctttgctcacatccagaag
ctgacccaggtgccaccaggcgagagcgttactgcaatggagctggaattcaagctgctg
gccaactctaaagcacatacctcacgtttcatcagtgccaacctcccatgcaacaaattc
aagaaccgccttgtgaacatcatgccatatgagctgacaagagtctgtctgcagcccatc
cggggtgtcgagggctccgattacatcaacgccagcttcatagatgggtacaggcagcag
aaggcctacatcgctacgcagggaccgctggccgagaccacggaggatttctggcggatg
ctttgggagcacaattccaccatcgtggtgatgttgacaaagctgcgcgagatgggccgg
gagaagtgccaccagtactggcccgcagagcgctctgcccggtaccagtacttcgtggtg
gaccccatggcagagtacaacatgccgcagtacatcctccgggagttcaaggtgacggat
gccagggacggccagtcacggaccatccgccagttccagttcacagactggcctgagcag
ggagtgccaaagacgggagagggcttcattgacttcattgggcaggtgcacaagaccaag
gagcagttcgggcaggatgggcccatcacagtgcactgcagtgctggggtcgggcgcaca
ggcgtgttcatcacactcagcatcgtgctggagaggatgcgctacgagggggtggtggac
atgttccagacggtgaagaccttgcggacgcagcggccggccatggtgcagacagaggac
cagtaccagctgtgctacagagcagcactggagtatctcggcagcttcgaccactatgca
acgtaa
DBGET
integrated database retrieval system
