Chryseobacterium nakagawai: EG343_19630
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Entry
EG343_19630 CDS
T06300
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnk
Chryseobacterium nakagawai
Pathway
cnk03030
DNA replication
cnk03410
Base excision repair
cnk03420
Nucleotide excision repair
cnk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EG343_19630 (ligA)
03410 Base excision repair
EG343_19630 (ligA)
03420 Nucleotide excision repair
EG343_19630 (ligA)
03430 Mismatch repair
EG343_19630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnk03032
]
EG343_19630 (ligA)
03400 DNA repair and recombination proteins [BR:
cnk03400
]
EG343_19630 (ligA)
Enzymes [BR:
cnk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EG343_19630 (ligA)
DNA replication proteins [BR:
cnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EG343_19630 (ligA)
DNA repair and recombination proteins [BR:
cnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EG343_19630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EG343_19630 (ligA)
MMR (mismatch excision repair)
DNA ligase
EG343_19630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EG343_19630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
DUF7575
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AZA92647
UniProt:
A0AAD0YMM7
LinkDB
All DBs
Position
complement(4305583..4307589)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNESYYLLDTPTVTDYEFDMLLEELQDLEAKHPEFYDENSPT
MRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDGPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPSQFFMRGEIYLTRKNFD
KLNKLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRSLSSVLYQFISEDIPAETHWELLQ
KAQGWGFKTSQQAKLCKTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTDKRTEESREIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYVLTKEQLLP
LERMAEKSAQNIISGIEKSKEISFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKAATVE
ELCQVEDIGAKIAVSIVDFFQNSENILMIERLKSYGVQLEKGESTNEVLSNVLEGKAFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIDKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaaaatagaacagctccgcaaagagctgcaccagcataac
gaaagctactaccttctggatactcctaccgttacagattacgaatttgatatgttattg
gaggaacttcaggatctggaagccaagcaccctgagttttatgatgaaaactctcctacc
atgcgtgtaggtggtggtattacaaaggtattcccaacgattcagcataaattcagaatg
tattctttggataattcttatgactttgatgatcttgaagactgggagaaaagaattatc
aaaactatagatggacctgtagaatttgtggctgaattgaagtatgacggagcctcgatc
tctattctttatgaaaacggaaaacttactcaggcggtaacccgtggtgatggttttcag
ggagacgaaattacgccgaatgtccgtaccatttctgatattcccttaacgttaaaaggt
gatttcccttcgcaattctttatgcgtggtgaaatttatttaacgagaaagaactttgac
aaacttaataaacttcgcgaagaagagggactggatccattcatgaaccctagaaatacg
gcaagtggaagtttgaaaatgcaagacagtgcagaggtaagaaaacgttcactttcttcc
gtattataccaattcatttctgaagatattcctgctgaaacacactgggaattgctacaa
aaggcacaaggctggggattcaagacctctcaacaggcaaagctttgtaaaacattggat
gaggtaaaagagtttatcacattctgggatacggaacgtcacaacctgccattcgaaatt
gatggaattgtactaaaagtaaattctttacagcagcaaagacagcttggatacacggct
aaatctccacgttgggctatggcttataagtttaaagccgaaaaggtagaaactgagctt
caaagtgtttcttaccaggtaggaagaaccggagcgattactcctgttgccaacttaaag
cctgttttgttggctggaacgattgtaaaaagagcatctctgcataatgaagacatcatc
aaaaagcttgatcttcatgagaatgattttgtctatgtagaaaaaggaggtgaaattatt
ccaaagattgttggagtaaatacagacaaaagaactgaagagagcagagaaatagaatat
atcaaacattgtccggaatgtggaactgagctggtaaaaattgaagaccaggcgatccat
ttctgtccgaatgaacttcactgcccaccacaggtagtaggaagaatgattcattatgtt
tcaagaaaagctttgaacattgataatcttggaagtgaaacgatcgaacagctttacagg
gaaaaattgattgaaaatcctgctgatttttatgtgttaaccaaagaacagcttcttcca
ctggaaagaatggcggagaaatctgctcagaatatcatctcagggattgaaaaatcaaaa
gagatttcatttgaaaaagtattgtatggaatcgggatcaagcatgtaggtgaaacggtt
gctaaaaaactggttaaaaacttccctactatagaagaattaaaagctgctactgtcgaa
gagctttgtcaggtagaagatattggtgctaagatcgcggtaagtattgtagatttcttc
cagaattctgaaaacatactgatgattgagcgtttaaaatcttacggggtacagcttgaa
aaaggagaaagtacgaatgaagttttatccaacgttctggaaggaaaagcatttcttttc
actgggaaattatctctattcaccagagaagctgctgaggaaatggtagaaaaacatgga
ggaaagaatatttctgcagtttcaaaaaacctcaactatcttgttgttggggaaaaagct
ggaagtaaactgaaaaaagctcaggatatcggaacgattgaaattctggatgagcaacag
tttttggatttaattgataaacaataa
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integrated database retrieval system
