Chionomys nivalis (European snow vole): 130863182
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Entry
130863182 CDS
T11437
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130863182 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnl03400
]
130863182 (Lig4)
Enzymes [BR:
cnl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130863182 (Lig4)
DNA repair and recombination proteins [BR:
cnl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130863182 (Lig4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
130863182
NCBI-ProteinID:
XP_057609068
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Position
20:58094497..58100972
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AA seq
911 aa
AA seq
DB search
MATSQSSQTVAAHVPFADLCSTLERIHKSKDRAEKIRHFKEFLDSWRKFHDALHKNKKDV
PDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPSGTRM
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDLVASNNSGKRKDLVKKSLLQLISQSSA
LEQKWLIRMIIKDLKLGVSQQTILNVFHNDAVELHNVTTDLQKVCQQLHDPSVGLSDISI
SLFSAFKPMLAAVADVERVEKDMKQQSFYIETKLDGERMQMHKDGEVYQYFSRNGYNYTD
QFGASPQEGSLTPFIHDAFRTDVQDCILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSEL
QTCYCVFDVLMVNNKKLGRETLRKRYEILSNTLTPIQGRIEIVQKKLAHTKNEVVDALNE
AIDNREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAEAPPHGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPYHKKSPPSSILC
GTEKPEVYIEPHHSVIVQIKAAEIVPSDMYKTGTTLRFPRIEKIRDDKEWHECMTLGALE
ELRGRASGKLATKHLHVGDDDEPREKRRKPVSKMKKTIGIIEHLKAPNLSNVSKVSNVFE
DVEFCVMTGMEGYPKPDLENRIAELGGCVVQNPGPETYCVIAGCRNIRVRNIISSDEHDV
VKPEWLLECFKTKMCVPWQPRFMVHMCPSTKQHFAREYDCYGDSYFVDTDLDQLKEVFSG
IKPREQQTPEEMAPVIADLEYRYSWDRSPLSMFRHCTVYLDLYAVVNDLSSKIEATRLGM
TALELRFHGARVVSCLSKGVSHVIVGEDPSRLADFKAFRRTLKKKFKILQERWVTDSVDK
CELQDESQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctacctcacagtcttcacaaactgttgcagctcatgtcccctttgcagatttatgt
tccacattggagcggatacataaaagtaaagaccgtgcagagaagatcaggcacttcaag
gaatttttagattcttggaggaaatttcacgatgcccttcataagaacaagaaggacgtt
ccggactccttttacccagccatgagacttattctccctcagttagagagagagaggatg
gcatatggtatcaaagaaaccatgcttgccaagctttacatcgaattactgaacttacca
agggaaggcaaggatgccctgaagctcctgaattatcgaacaccgagtggcactcgcatg
gatgctggggactttgcgatgattgcgtacttcgtgttgaagccgcggtgcttacagaaa
ggaagcttaaccatacagcaggtgaatgaactcttggacttagtcgccagcaacaattct
ggcaaaagaaaagacctagtaaagaagagccttctccagttgatatcgcagagttcagcc
ctggagcaaaagtggctgatccgcatgatcattaaagacttaaagctgggcgtcagtcag
caaacgatactgaacgtttttcataacgacgcagttgagttgcacaacgtcaccacggat
ctgcagaaggtctgccagcaactccatgacccctccgtagggctcagtgatatctctatc
agcctcttttctgcctttaagccaatgctagccgcggtagccgatgtggagcgcgtggaa
aaggacatgaaacagcagagtttctacatcgagaccaagctggacggcgagcgcatgcag
atgcacaaagacggggaggtgtatcagtacttctccaggaacggctataactataccgat
cagtttggcgcatccccccaggaaggctccctcacccccttcatccacgacgccttccgg
acagatgtgcaggactgcatccttgacggcgagatgatggcctacaacccgaccacgcag
acgttcatgcagaagggggtcaagtttgacatcaaaaggatggtggaggattccgaactg
cagacgtgttactgtgtcttcgacgtgttgatggttaataataagaagctagggcgtgag
accctgaggaagagatatgagatccttagtaatactttgacacccatccagggtcgaata
gagatcgttcagaaaaagctagctcacacgaagaatgaggtggtggacgccttaaatgaa
gccattgataacagagaggagggcatcatggttaaacaccctctgtcaatttacaaaccg
gacaagagaggtgaagggtggttgaaaattaaaccagaatatgtcactgggttaatggat
gaattagacctcttaattgtggggggctactggggtaaaggttctcgaggcggcatgatg
tctcactttttgtgtgcggtggcagaggcaccgcctcatggtgaaaagccctctgtgttc
catactctgtgccgtgttgggtcaggatacaccatgaaggagctctatgatcttggcctg
aaattggccaaacattggaagccttaccataagaaatctccaccgagtagcattttatgc
ggcacagagaagccggaagtgtacatcgagcctcatcactccgtgattgtccagatcaag
gcggcagagatcgtccccagtgacatgtacaagactgggaccacgctgcgcttcccacgc
atcgagaagatcagagatgacaaggagtggcatgagtgtatgaccctgggtgccctggaa
gagctgagggggagagcatccgggaagcttgctacaaagcaccttcacgtgggcgacgat
gacgaacctagagaaaagaggcggaaacccgtctccaaaatgaagaaaaccatcggaatt
atcgaacacttgaaagcacctaacctctctaacgtaagcaaggtttctaacgtatttgag
gacgttgagttttgtgtcatgactgggatggagggttatcccaagcctgacctggagaac
agaattgcggaacttggtggctgcgtcgtgcagaatccaggcccagaaacgtactgtgtg
atcgcagggtgcagaaacatcagagtgaggaacattatctcctccgatgaacacgatgtc
gtcaagcccgagtggctgctggagtgttttaaaacaaaaatgtgtgtgccatggcagcct
cgcttcatggttcacatgtgcccgtcaacaaagcagcactttgcccgcgaatatgattgc
tatggagacagctattttgttgatacagatttggatcaactgaaagaagtgttttcagga
attaaacccagggagcagcagactcctgaagaaatggcccccgtgatcgccgacctagaa
taccgctattcctgggatcgctctcctctcagtatgtttcggcactgtaccgtgtatctg
gacttgtatgctgttgtcaacgacttgagctccaaaatcgaagcaacgagattaggtatg
acagcgctcgagctgcggtttcatggagccagggtagtgtcctgcttatctaaaggagtg
tctcatgtgatcgttggggaagatccgagccgacttgcagacttcaaagctttcagaagg
actcttaagaaaaagtttaaaatcctgcaagaacgttgggtgaccgattcagtagacaag
tgcgagcttcaggatgaaagtcagtatttgctctag
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