Chionomys nivalis (European snow vole): 130866916
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Entry
130866916 CDS
T11437
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cnl Chionomys nivalis (European snow vole)
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnl03036
]
130866916 (Smchd1)
03400 DNA repair and recombination proteins [BR:
cnl03400
]
130866916 (Smchd1)
Chromosome and associated proteins [BR:
cnl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130866916 (Smchd1)
DNA repair and recombination proteins [BR:
cnl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130866916 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
130866916
NCBI-ProteinID:
XP_057614529
LinkDB
All DBs
Position
26:complement(15353309..15488713)
Genome browser
AA seq
2006 aa
AA seq
DB search
MAATGASNPGGLSAGSGTDGGVDGCRTVYLFDRRGKESELGERALQVSNRAGYAEFRAAV
CQTIGISSEEKFVITTTSRKEITRDNFDEAVKDGVTLYLLQSVDQSLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSHNVGVRRIQIKLLFDETQGKPAV
AVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHNLIIEEKKKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EISTAKEVGPFNNLDIEISLFEKGKTPKIVNLREIHDDMQTLYINTASDSFEFKAHVEGD
GVVEGVIRYHPFLYDRETYPDDPCFPSKLRDEEDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTVKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IRTVPIAKLDRTVAEKTIKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRALPSKAIKFSIKEGKPEKFSFGLLDSPFRVGVP
FNIPLELQDEFGHTTQLSSDIDPVLEASGLSLHYEEITRGPNCVIQGVVAKGLVNSCQGK
NFNLKVIIPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTVFPFQVEVVDESDNV
TAQPKLIVHCKFLGAPSLPVYTVDCSSSGTSILTGSAIHVKNIKKDQTLTARIEIPSCKN
VSPVEKTIKLLPSSHVARLQIFSVEGQKAIQVKHQDEVNWVAGDVMQNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNREHLLQGLLPGVQVPTSVKDVRYCQVSFQDDHVSLESAFT
IRPLPDEPKHLKCELKGGKTVQMGQELQGEIVVMVADQYGNQISAFSPDSLSALSIAGVG
LDNSNLKTTLETKTQSIIVRGIRFVPGPPGHKDLCFTWREFSDFIRVHLISGPPAKLHLI
DWPELKESMPVINGRQLPNPLVVQLCDQWDNPALVSNVKISLIKTSNLKLIPSNQQHKTD
DKGRANLGVFTVFAPRGEHTLQVKGVYNKSAIEGPTIQLMVLPDPEKPIRLNVKYDKDAS
FIAGDIFTDFMVSVISEGGSVIKNINPTRISMKLWKLSSSMSRAPTNAETFSCNKIKDND
KEDGCFYFREKATPSKVGTYCIQFDFMIDKTNMLSSEQVIVDVLPNQPMKLVPDVQPATP
AVSNVRSIASRTLVRDLHLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSRTLESYSLPFMFYNDVKKQ
QQMAALTKEKDQLSRSIIMYRSLFDANKQLVDEMKCQVEEAKLKEVQLRNELKACNIDIP
TAQQIPHIEALLEKKITEQSELKKKPRRSCTLPNYTKRSGDVLGKIAHLAQIEDDRAAVV
ISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIYRKTVPDWKRPLPHIRNGKLH
FKPFGNPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCMVLGKEIDLIQQYRTAVCKLN
TVNKDLSNQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPAWKCNDSFCHSPKIELT
ECPIPTKRMRRESTRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacgggcgccagcaatcccggaggcctctcggcggggtctgggacagacgga
ggcgtcgacggctgcaggaccgtgtacttgtttgaccggcgcgggaaggagtccgagctc
ggggagcgcgcactgcaggtctccaaccgcgcaggctacgcggagttccgcgctgctgtg
tgtcagacaattggtatttcatctgaagaaaagtttgttattacaactacaagcaggaaa
gaaattacccgtgataattttgatgaagctgttaaagatggagtcactctatacctgcta
cagtcagttgaccaatcactattaacagcaacaaaagaaagaattgacttcctgcctcac
tatgacactctggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatcct
ttgccatttgctctcgcagaattaatcgacaattcattgtcagccacttctcacaatgtt
ggtgttagaagaatccagatcaaattgctttttgatgaaactcaaggaaaacctgccgtt
gcagtggtagataatgggagaggaatgacctccaaacaacttaacaactgggctgtgtac
aggttgtcaaagtttacaagacaaggtgactttgaaagtgatcattcagggtatgttcgg
ccagtaccagtaccacgcagcttgaacagtgatatttcctattttggtgttggaggtaaa
caggctgttttctttgttggacagtcagccagaatgataagcaagcctgcagactcccag
gatgttcatgagcttgtgctttctaaagaagactttgagaaaaaggaaaaaaataaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattacaaat
gatgatgaaagattcctacacaatcttattatagaggagaaaaagaaagatagctttact
gctgtggttattacaggggtgcaaccagaacacatacagtacttgaaaaattatttccat
ctttggacacgacagttaacgcatatttatcattactatattcatggaccaaaagggaat
gaaataagtactgctaaagaagttggacctttcaacaatcttgatattgaaatttcttta
tttgaaaaaggaaagacacctaagattgtcaacctaagggaaatacacgatgacatgcag
acattgtatataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagat
ggtgtggtggaaggggttatccggtatcatcccttcttatatgatagagaaacttatcct
gatgatccatgcttcccatcaaaattaagagatgaagaagatgatgatgattgcttcata
cttgagaaagcagcaagagggaaaagacctatttttgagtgcttttggaatggacggtta
ataccatatacatcagttgaagattttgactggtgtgctcctcctaaaaagagagggctt
gccccaattgagtgctttaatagaatatctggtgcattgttcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacaagaatcttaaatggacaggagcagagaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaaatatgacaaacaaataaaatttacgctttttaaa
ggagtgattacacgtcctgatcttccctccaagaaacaaggcccctgggcaacatactca
gcaatagagtgggacggaaaaatatacaaagcgggacaactggtcaagacagtcaagaca
ctgcctctcttttatggaagcatagtaaggttcttcctttatggtgatcatgatggagaa
gtgtacgctacaggaggtgaagttcagattgcaatggaaccccaggcgctgtacgatgaa
ataagaactgtgcctattgcaaagctggacaggactgttgctgagaaaacaataaaaaaa
tatgtagaagatgaaatggcaaggctccctgataggctgtctgtaacttggcctgaagga
gatgaattattgccaaatgaaattaggcctgccggaaccccaattggtgcactaagaatc
gaaatactaaacaagaagggggaagcaatgcagaagctcccagggacaagtcacggagga
tccaagaagctgctggtggaacttaaagtcatattacacacttcaagtggaaacaaagaa
atcatttcacatatcagtcagcatggaggaaaatggccttattggtttaaaaaaatggaa
aatatccagaaactgggtaattatacattgaaattacaagtggtattgaatgaaagtaat
gcagatacctatgcaggaagagcgctaccttctaaagcaataaaattttctattaaagag
ggcaagccagagaagttttcatttggtcttctggattccccttttcgtgttggagttcca
ttcaatattcctttggagttacaggatgaattcggtcacacaacccagctatcatctgat
attgatccagttcttgaagcaagtggtctgtctttacattatgaagaaataaccagaggc
ccaaattgtgtaatacaaggtgttgtagctaaaggtctggttaactcttgtcaaggcaag
aattttaatctgaaggttattattccgggcttaaaagaagattcacagattttgaaaatt
agattgctacctggtccccctcatcgactaaaagtgaaacctgactcggaaatcctggtc
atagagaatggaacagtgttcccgtttcaggtggaagttgtggacgagtcagacaacgta
acagcacagccgaagctgattgtccactgcaagtttctaggtgctccaagcctgccagtc
tacactgtggattgtagtagctctgggaccagcatcctaacagggtcagcaattcacgtt
aagaacattaagaaagaccagacactgactgctaggattgagatacctagttgtaaaaat
gtgtcacctgtggaaaagactatcaagttacttcccagtagccacgttgctcgactacag
atatttagtgtggaaggacaaaaggcgatccaggtcaagcatcaggatgaggttaattgg
gtcgcaggggatgtaatgcagaatctgatttttcaaatgtacgatgaaggagaaagagaa
atcaatattacaccatccttggcagaaaaaatcaaagttaactggactcctgaggttaac
agagaacatttgctacaaggtttgcttcctggtgtgcaagtaccaacatctgtgaaagat
gtgcgctactgccaggtttctttccaagatgaccatgtgtctctggaaagtgcatttaca
atcagaccacttcctgatgaacccaaacatttaaaatgtgagctaaaaggaggaaaaacg
gtgcagatgggccaagagcttcaaggagaaatagttgttatggttgcagatcagtatgga
aatcagatttcagcattttcaccagattctttatctgctttgtcaattgctggagttgga
cttgataactctaacttgaaaaccactctggagaccaagacacagagtataattgtccga
ggcatcagattcgttccaggtcctcctggacataaggatctttgttttacttggcgagag
ttttctgactttattcgtgtccacctcatttctggacctccagccaagctgcatcttatc
gactggccagagctaaaagagtccatgccagtgatcaatggaagacagttacctaaccct
ctcgttgttcaactctgtgaccagtgggataatcctgcattggtctcaaatgttaaaata
agtctcataaaaactagcaatttgaagctaataccttcaaaccagcagcataaaacagat
gataagggcagagctaatttgggggtattcactgtttttgctccaaggggagaacacact
ctacaggttaaaggcgtctataataagagtgctatagaaggaccaacaattcagttaatg
gttcttccagaccctgaaaagcccattcgtctcaatgttaaatatgataaagatgcctct
tttatagcaggtgacatattcacagattttatggtgagtgtgatctctgaaggaggtagt
gtcatcaaaaatattaatccaacacgcatttccatgaaactgtggaagctgtctagtagc
atgagccgggcaccaacaaatgcagaaacatttagttgtaataaaataaaagacaatgac
aaagaagatggctgcttctatttcagggaaaaagcaacccctagcaaagtcgggacatac
tgtatccagtttgactttatgattgataaaacaaatatgctcagcagcgagcaggttata
gttgatgttctgcctaatcagcctatgaagttggttcctgatgtccaacctgctacccca
gctgtttctaatgttcgctctattgccagcaggaccttggtcagagacctacatctcagt
atcacagataattatggtaatcatactggaatggatttggttggcactgtagtagctacc
attaaaggttttaatgaggaggacactgataccccactcttcatcgggaaagttaggaca
cttgaatttccctttgtgaacggttctgctgaaatcacgactctagtgctggcagaaaac
agtcctggaagggatagtactgaatattttattatctttgagcctcgactgtcaacttta
tcaagaacattagaatcctatagcctgccatttatgttttacaatgatgttaaaaagcag
caacaaatggcagcactcacgaaggaaaaggaccagttatctaggtccatcattatgtac
agaagtctctttgacgccaacaagcagcttgttgatgagatgaaatgccaagttgaagaa
gcaaaattaaaagaggtccagctgcgaaatgaactaaaagcatgcaatattgatattcct
acagcacaacagatacctcatattgaagcacttttggaaaaaaagataacagaacaaagt
gaacttaaaaaaaagcccaggagatcatgcactcttccaaactacaccaagcgcagtgga
gatgttttgggaaagatcgcacatctagcacagattgaagatgatcgcgctgcagtggtt
atctcttggcatctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgca
cgctctatctatgatgaaacgcaaggtcgtcagcaggtgttgccccttgattctatttat
aggaaaactgttccagattggaaaagacctctacctcatatccgaaatggtaaattacat
tttaaaccctttggaaatccagtctttgcccgagatttgttaacattcccggataacgtt
gaacactgtgaaacagtttttggtatgctgttaggagacaccattattttggataatcta
gatgcagccaatcattatagaagagaggttgttaaaatcacacactgtcccacattactg
accagagatggagatcgtattagaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggacaaacttcggggaatggtcttcggagctccagtaccaaaacagtgtatg
gtcttggggaaagaaatcgatcttattcagcagtaccgcactgctgtgtgcaagctgaac
actgtgaacaaggatttgagcaatcagttacagtaccttcacactcctgatatgaagaag
aagaaacaagaacttgatgaacaggaaaagagtctgaaactaatagagcaaaagctcggt
atgactcctgcatggaagtgtaatgactcattttgtcactcaccaaaaattgagttgaca
gagtgtccaattcctacaaaaagaatgagaagagaatccaccagacagaatagaagacca
aaaggtgatgtaccaaactga
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integrated database retrieval system
