Chionomys nivalis (European snow vole): 130877843
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Entry
130877843 CDS
T11437
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130877843 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnl03041
]
130877843 (Eftud2)
Spliceosome [BR:
cnl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130877843 (Eftud2)
Complex C
U5 SnRNP specific factors
130877843 (Eftud2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
130877843
NCBI-ProteinID:
XP_057631444
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All DBs
Position
7:complement(82795802..82842963)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHDDEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgaatttgggaactatattggaccagagcttgattctgat
gaagatgatgatgaactgggaagagagacgaaagatcttgatgagatggatgaggatgag
gacgaggatgacgtgggagagcacgatgatgagcaccctgggatggaggtggtgctgcat
gaggacaagaagtactaccccaccgccgaggaggtgtacggccctgaggtggagaccata
gttcaggaggaagacacccagcctctcacagagcccattataaagccagtaaaaaccaag
aagttcactctgatggagcagacattacctgtcacggtgtatgagatggatttcttagca
gatctgatggacaactcagagctcatccgaaacgtgaccctttgcggccatctccaccac
ggcaagacgtgttttgtagattgtttaatagagcagacgcatccagaaatcagaaagcgc
tatgaccaagatctgtgctacactgacatcctcttcacagagcaagagagaggtgttggc
atcaagagcactcctgtgacggtggtgctgccggataccaaagggaaatcttacctcttc
aacatcatggacacaccaggacatgtgaatttttctgatgaggtcacagctggcttgcga
atctcggatggagtggtccttttcattgatgcggctgagggggtgatgctgaatacagag
cgtctgatcaagcacgcagtgcaggagaggttagcagtcaccgtgtgcatcaacaaaatc
gaccggctgatcttggagctgaaactgcccccaacagatgcttattacaaacttcgacac
attgtggatgaggtcaatggattaataagcatgtattccaccgacgagaacctgatcctt
tccccactcctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggtgacattaattaccaggaatttgct
aaaaggctctggggtgacatctacttcaatcccaaaacgagaaagttcacaaaaaaggct
ccaaccagcagctcccagaggagctttgtggagtttatcttggagcccctttataagatc
cttgcacaggtggtgggtgatgtagacaccagcctgccaaggaccctggacgaacttggc
atccacctgaccaaggaggagctaaagctgaacatccgccctctgctcaggctggtctgc
aaaaagttctttggcgagtttacaggctttgtggacatgtgtgtgcagcacattccctct
ccaaaggtgggcgccaagcccaagatcgagcacacttacactggcggcgtggactccgac
cttggcgaggccatgagtgactgtgacccagatggtcccctgatgtgccacaccactaag
atgtacagcacagacgacggagttcagtttcatgcctttggtcgggtgctaagtggcacc
atccatgcagggcagcctgtgaaggtgctgggggagaactacactctggaagatgaggaa
gattcccagatctgtaccgtgggccgcctttggatctctgtcgccaggtaccacattgag
gtcaatcgtgttcctgctggcaactgggttctgattgaaggtgttgatcagccaatcgtg
aagacagcaaccataactgaaccccgaggcaacgaggaggctcagatcttccggcccttg
aaattcaataccacatctgttatcaagattgctgtggagccagtcaacccctcagagctg
cccaaaatgcttgacggcctgcggaaggtcaacaagagctatccatcgctcaccaccaag
gtggaagagtctggcgagcatgtgatcctgggcactggggagctctacctggactgtgtg
atgcacgacctgcggaagatgtactcagagatcgacatcaaggtggctgacccagttgtg
acgttctgtgagacagtggtagaaacatcctccctcaaatgctttgctgaaacacccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggcctggctgaggacatc
gagaacgaagtggtccagatcacctggaacagaaagaagctgggcgagttcttccagaca
aagtatgactgggatctgctggctgcccgttccatctgggcctttggtcctgacgctaca
ggaccaaacatcctagtggacgacacattgccctctgaggtagacaaggcacttcttggc
tcagtgaaggacagcattgttcaaggtttccagtggggaacccgggagggacctctctgt
gatgaattgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaggaaccc
ctccatcgcggtggaggccagatcatccccacagctaggagggtggtttactctgccttc
ctcatggccactcctcgtctgatggagccttactactttgtagaggtccaggccccggca
gactgtgtgtctgctgtttacacagtcctggccaggcgcagggggcatgtgacccaggat
gcacccattccaggctcccctctctacaccatcaaagctttcattccagccatcgactct
ttcggctttgagactgatctccgcactcatacccaaggccaggccttttccctgtccgtc
ttccaccattggcagattgtacctggtgatcctctggacaagagcattgtcatccgccca
ttggagccacagccagctcctcacctggcccgggagttcatgatcaaaacccggcgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgatcctatgttgctggag
cttgccaaacaggacgttgtgctcaattatcccatgtga
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