Clostridium neonatale: CNEO_0462
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Entry
CNEO_0462 CDS
T08280
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnn
Clostridium neonatale
Pathway
cnn03030
DNA replication
cnn03410
Base excision repair
cnn03420
Nucleotide excision repair
cnn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNEO_0462 (ligA)
03410 Base excision repair
CNEO_0462 (ligA)
03420 Nucleotide excision repair
CNEO_0462 (ligA)
03430 Mismatch repair
CNEO_0462 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnn03032
]
CNEO_0462 (ligA)
03400 DNA repair and recombination proteins [BR:
cnn03400
]
CNEO_0462 (ligA)
Enzymes [BR:
cnn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNEO_0462 (ligA)
DNA replication proteins [BR:
cnn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNEO_0462 (ligA)
DNA repair and recombination proteins [BR:
cnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNEO_0462 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNEO_0462 (ligA)
MMR (mismatch excision repair)
DNA ligase
CNEO_0462 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNEO_0462 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_pol_lambd_f
PTCB-BRCT
HHH
5_3_exonuc
DNA_ligase_ZBD
RNA_ligase
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_PADR1
IMS_HHH_1
POLH-Rev1_HhH
DUF669
DUF4796_N
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
CAH0435197
LinkDB
All DBs
Position
CNEO:453050..454912
Genome browser
AA seq
620 aa
AA seq
DB search
MEEETGYVLPYSPTLRVGDVVLGGFNKYTHKARLWSMDKAQTVQALKDWHNRNVKFVEEM
RSRGEELPDLKYVLTKKFDGLTINLTYNEEGVLSIAATRGTGETGEDVTAQVKTIKSIPL
KIDSDDVFEVHGEAIMTQEAFDKYNESSEIPLKNLRNGAAGALRNLNVKETARRNLSAFF
YDVGYKEGEQFKSYLEMMKFIKEKGLPVDDYMEVCTTIEEIEKQIEHIKEIRFTLGYDID
GLVIAIDDIRTRELLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVGPTAILEP
VELAGVTVKRATLNNMDDIQRKGVRIGADVFVRRSNDVIPEIMGVVPESLDGSEEIKVPE
TCPACGSHLVLNGAHYFCENTLSCKPQMVKSIVHYAGREAMNIAGFSERTAEQLFEKLNI
KSISDLYKLKEEELVDLEKFGPKKAQNLLEAIEKSKNCQLHSFIYALGIPNVGAKTAKDL
VNKFKSIEGLKKATFDELVSVQDVGDIVAQDVLAFFKEEKVLETIDELLSLGVNPMYEEK
EVIQSPFEGKTVVATGSLQNYSRTGIKEKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTK
AQELGIKVLSEEEFEEMLKG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
ttggaggaagaaacaggatatgttcttccttattctccgacgttaagagttggtgatgtt
gttttaggtggatttaacaaatatacacataaggcaagactatggagtatggataaagct
caaactgtgcaagcattgaaagattggcacaatagaaatgtgaaatttgtagaggaaatg
agaagtagaggagaagagcttccagatttaaaatatgttcttactaaaaagttcgatgga
ttaacaattaaccttacttataatgaagaaggagttctttctatagctgcaactagagga
actggtgagactggagaagatgtaaccgctcaagttaaaacaataaaatcaattccactt
aagattgatagtgatgatgtgtttgaagttcatggtgaagcaatcatgacgcaagaagca
tttgataaatataatgagtcttcagaaattccattaaagaacttaagaaatggagctgct
ggagctcttagaaatcttaatgttaaagaaacagcaagaagaaatttatcagcatttttc
tatgatgtgggttataaggaaggcgagcaatttaaatcttatttagaaatgatgaaattc
ataaaagaaaaaggtcttccagttgatgattatatggaagtttgtactacaatagaagaa
atagaaaaacaaatagaacatataaaggaaataagattcacattaggatatgatattgat
ggattagtaatagctattgatgatattagaaccagagaactacttggttacacggttaag
ttccctaagtgggccattgcttataaatttgaagctcaggaagcaacaactaagctttta
gatgttgaatggaatgttggtagaagcggaagagttggaccaacagctatattagaacca
gtagagcttgctggagtaactgttaagagggccactcttaataatatggatgatattcaa
agaaaaggtgtaagaataggtgctgatgtatttgtaagaagaagtaatgatgttattcct
gaaatcatgggagtggttccagaatcattagatggctcagaagaaataaaagtaccagaa
acatgtcctgcctgtggaagtcacttagtattaaatggagcgcattatttctgtgaaaat
actctgtcttgtaaaccacaaatggttaagagtatcgttcattatgcaggaagagaagct
atgaatatagcaggattctcagagagaactgctgaacaattatttgaaaaattaaatatt
aaatcaatatctgatttatataaattaaaagaagaagagttagttgatttggagaaattt
ggaccaaagaaggcacaaaatcttttagaagccatagaaaagagtaagaattgtcaatta
cattcatttatatatgccttaggaatacctaatgtaggtgcaaaaacggctaaggatttg
gtaaataaatttaaatcaatagaaggtcttaagaaagcaacgtttgatgaacttgttagt
gttcaagatgttggtgatatagttgcacaagatgtattagctttctttaaagaagaaaaa
gtattagagacaattgatgagttattatcattaggtgttaatcctatgtatgaagaaaaa
gaagttattcaaagtccttttgaagggaaaacagtggttgcaacaggatcgcttcaaaat
tactcaagaactggaataaaagaaaaattagaaagtttaggagctaaggtagcaggaagc
gtaagtaagaagacagattatgtaatagctggagaagcagcgggatccaaacttacaaag
gcacaagagcttggaataaaagtgctttcagaagaagaatttgaagagatgttgaaaggg
tga
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