Clostridium novyi: NT01CX_0434
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Entry
NT01CX_0434 CDS
T00431
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cno
Clostridium novyi
Pathway
cno03030
DNA replication
cno03410
Base excision repair
cno03420
Nucleotide excision repair
cno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NT01CX_0434 (ligA)
03410 Base excision repair
NT01CX_0434 (ligA)
03420 Nucleotide excision repair
NT01CX_0434 (ligA)
03430 Mismatch repair
NT01CX_0434 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cno03032
]
NT01CX_0434 (ligA)
03400 DNA repair and recombination proteins [BR:
cno03400
]
NT01CX_0434 (ligA)
Enzymes [BR:
cno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NT01CX_0434 (ligA)
DNA replication proteins [BR:
cno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NT01CX_0434 (ligA)
DNA repair and recombination proteins [BR:
cno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NT01CX_0434 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NT01CX_0434 (ligA)
MMR (mismatch excision repair)
DNA ligase
NT01CX_0434 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NT01CX_0434 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
DNA_ligase_ZBD
DNA_pol_lambd_f
BRCT_2
Nlig-Ia
RNA_lig_T4_1
RNA_pol_A_CTD
POLH-Rev1_HhH
ILEI
DUF7501
HTH_17
Zn_ribbon_3
SAP
Motif
Other DBs
NCBI-ProteinID:
ABK62450
UniProt:
A0Q2Q3
LinkDB
All DBs
Position
complement(2110556..2112550)
Genome browser
AA seq
664 aa
AA seq
DB search
MEDKKLLIYELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKETGLVLPYSPTQR
VGDVVLSKFDKYTHKGKLWSLGKAQSLKEVEDWHNKNVKAVNEYNLTHDDKLPPIKYIIT
KKFDGLTINCTYNEDGILVTAATRGTGEIGEEITAQAKTIKTIPLKIDNDAVIEVHGEAI
MTKEAFEEYNKVAVVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGYNEGTPFKTYG
EMLKFIKDHGIPMDDYAMECSTIEEIEKEINYIEEIRNKLNYDIDGAVIAVDDMKTRELL
GYTVKFPKWALAYKFEAQEATTKLLEVEWNVGRSGRVTPTAILEPVEIGGVTVKRATLNN
MDDIERKGVKLGSTVFLRRSNDVIPEIMGVVEESLEGSKDIEAPTTCPYCGSEIVQEGVH
YFCENTLSCKPQLVKSIVHFGSREAMNIAGFSEKTAEQLFEELEIKSISDLYRIKKEDLL
KLNRFGEKKAQNLIDAIESSKECDLPSFIYALGIPNVGKKTSTDLCKKFKTLDNLKKAKF
EELVSVEDIGDIVAQSVLDFFNDETILKSIDELLSLGVTPKFKEEEIKENIFNGKTVVVT
GSLSSFSRNEIKEKLQSLGAKVAGSVSKKTDYVLVGKDPGSKYEKALQLNIKIISEEDFK
NMIG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaagataaaaagctattaatttatgaacttgtagaagagcttaataaattagcttat
gaatattatgtgcttgataatcctagcgtatcagataaggattatgataaaaaatatgat
aaattagtagagcttgaaaaggaaacgggattagttcttccatattcgccaactcaaaga
gtaggtgatgtagtattatctaaatttgataaatacactcacaagggaaagctttggagt
cttgggaaagcacaaagtttaaaagaagtagaggattggcataacaagaatgtaaaagct
gtaaatgagtataacttaacgcatgatgataaattaccccctataaaatatataattact
aagaaatttgatgggcttactataaattgtacatataatgaagatggaatattggttaca
gcagcaacaaggggtacaggggaaatcggcgaggagattacagcacaagctaaaactata
aagacaattcctctaaaaatagataatgatgccgtaatagaggtgcatggtgaggctata
atgacaaaagaagcctttgaagaatataataaagtagcagtagttcctctaaaaaactta
agaaacggggctgcaggagctcttagaaatttaaatgtaaaagagacggcaagaagaaat
ttgtcagcttttttctatgacataggttataatgagggaactccatttaagacttatggt
gaaatgctaaagtttataaaagaccatggaattcctatggatgactatgctatggaatgt
tctacaatagaggaaatagaaaaagaaattaattatatagaagaaataagaaataaatta
aattatgatatagatggagcagtaattgcagtagatgatatgaaaactagggagcttcta
ggttatacagtaaaatttcctaagtgggcattagcttataaatttgaagcacaagaagcc
actactaaattacttgaagtggaatggaatgtaggaagaagcggaagagttacacctaca
gccatactagaaccagtggaaattggaggagttactgtaaaaagagcaactcttaacaat
atggatgacatagaaagaaaaggtgttaagttaggtagcacagtatttcttcgtcgttct
aatgatgtaataccagagattatgggtgtagttgaagaatccttagaaggatcaaaggat
atagaagcacctactacatgcccttattgtggaagtgaaattgtgcaagaaggtgttcac
tatttttgtgagaatacactttcatgtaaacctcaattagttaaatctattgttcatttt
ggaagcagagaagctatgaatatagcaggttttagtgaaaaaacagcagaacaattattt
gaagaattagaaataaagtctatatcggatttatatagaataaaaaaagaagatttatta
aaattaaaccgttttggagaaaagaaagctcaaaacttaattgatgccatagaaagcagc
aaagagtgtgatttaccttcatttatatatgcattaggtattcctaatgtaggtaaaaaa
actagcacggatttatgcaaaaaatttaaaaccctagataatttaaaaaaggctaaattt
gaagaacttgtatctgtagaagacatcggagatattgtggcacaaagtgtattagacttt
tttaatgatgaaacaatacttaaaagtatagatgaacttttaagtctaggggtaactcct
aaatttaaagaagaagaaataaaggaaaatatatttaatggtaaaactgtagtagttacg
ggttcattgagttcatttagtagaaatgaaataaaagaaaaacttcaatccttaggggct
aaggtagcaggcagtgtaagtaaaaagactgattatgtcttagttggaaaagatccaggt
tcaaaatatgaaaaagctcttcagcttaatattaaaattattagtgaagaggattttaaa
aacatgataggatag
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integrated database retrieval system
