Catalinimonas niigatensis: PZB72_11375
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Entry
PZB72_11375 CDS
T10977
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnq Catalinimonas niigatensis
Pathway
cnq03030
DNA replication
cnq03410
Base excision repair
cnq03420
Nucleotide excision repair
cnq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PZB72_11375 (ligA)
03410 Base excision repair
PZB72_11375 (ligA)
03420 Nucleotide excision repair
PZB72_11375 (ligA)
03430 Mismatch repair
PZB72_11375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnq03032
]
PZB72_11375 (ligA)
03400 DNA repair and recombination proteins [BR:
cnq03400
]
PZB72_11375 (ligA)
Enzymes [BR:
cnq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PZB72_11375 (ligA)
DNA replication proteins [BR:
cnq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PZB72_11375 (ligA)
DNA repair and recombination proteins [BR:
cnq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PZB72_11375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PZB72_11375 (ligA)
MMR (mismatch excision repair)
DNA ligase
PZB72_11375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PZB72_11375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
HHH
CdhD
Motif
Other DBs
NCBI-ProteinID:
WPP52975
LinkDB
All DBs
Position
2779763..2781775
Genome browser
AA seq
670 aa
AA seq
DB search
MTAEEAKKKIEELTDSINYYTHLYYQESTSKISDYEFDQLLEKLIELENEFPQFRYPHSP
SQRVGGTITKDFATVVHEYPMLSLSNTYSHEELIEFDRRVAKGLNDQPYEYFCELKFDGV
AISLLYENGYLIRAATRGDGVRGDDITHNARTIRTIPLSIKADNLPVRFEVRGEVFMPRT
VFNKLNRLREEEGEALLANPRNAASGSLKMQDSALVAQRQLDCYLYGLVGEDLHVLTHAD
AIYALEKWNFHISDTYCQCKNMDAVLEYINEWEKKRVEFPVDTDGIVIKVNSHEQQRILG
STAKSPRWAIAYKYKAQSAATILLDIDYQVGRTGAITPVAHLSPVKLAGTIVKRASLHNA
NEIARLDLRVGDTVFVEKGGEIIPKVTGVDVSKRQPHSQEVRYIAHCPSCNTALIRKEGE
AQHFCPNIKGCPTQIKGRIEHFIQRKAMNIDSMGKETVALLYEKGLLHTPADLYKLTYDD
IFILEGFKDLSTQNLLKGIEASKSTSFENVLFALGIRYVGKTVAEKLARHFGDIYKLEKA
TFDELVNVPEIGERIALSILNFFEDQDNRDIVDELKEAGLQFEIVEEKDRHESSILEGKS
FVVSGIFQSFSREEIKEKVRANGGQIVSAVSGKVDYLLAGENMGPAKRKKAKSLGVSIIS
EQDFLNMLTT
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagaggaagcaaaaaaaaagattgaagagcttactgacagcatcaattactat
actcatttatattatcaggaaagcacctcaaaaatttcggattatgagtttgatcaatta
ctggaaaaactgattgaactagaaaatgagtttcctcagtttcgctaccctcactctcct
tctcaacgggtaggaggcaccatcaccaaagattttgcgactgttgttcatgaataccct
atgctatcattgagcaatacctacagccatgaggaattgatagagtttgacagaagagtg
gccaaaggattaaatgaccaaccctatgaatacttttgtgagcttaaatttgatggtgta
gccattagtctgttatatgaaaatggttatcttatcagggcagctacccgcggtgatggt
gtacgtggtgacgatattacccataatgccagaaccatacggactatcccattgagtatc
aaagcagataatttacctgtacgttttgaagtaagaggcgaagtatttatgcctcgcaca
gtgtttaacaagctcaatagactacgtgaggaagaaggtgaagccttgttagctaaccca
cgaaatgcagcatccggtagccttaagatgcaggactcagcattagtagctcagcggcag
ctcgattgttatctatatggattagtgggagaagatcttcatgtattgacccacgccgat
gccatttatgccctggagaagtggaattttcatatatctgatacttactgccaatgtaaa
aacatggatgcagtactagaatacatcaatgaatgggaaaaaaagcgcgtagagttcccg
gtagatactgatggcattgtgattaaagtaaatagccatgagcagcaaagaatactagga
agcactgcaaaaagtcctcgctgggccattgcttataaatataaagcacaaagcgccgct
accatacttttggatatagactatcaggtaggacgaaccggcgccattaccccggttgct
catttatctcctgtgaagttagcaggaacaatcgtcaagagagcttctcttcataatgcc
aacgaaattgcacgactagacttaagagtaggagatactgtatttgtagaaaaaggaggg
gagatcattcccaaagtgactggcgtagatgtaagtaaacggcagccacatagccaggaa
gtacgctatatcgcgcattgcccttcttgcaataccgctctgatacgcaaagaaggtgaa
gcccagcatttttgcccaaacatcaaaggttgtcctacccagatcaaaggtagaatagag
cattttatccagcgtaaagccatgaatattgacagcatggggaaagaaactgtagcttta
ctttacgaaaaaggcttactccatacgcctgcagatctgtataaacttacttatgatgac
atatttatacttgaaggatttaaggatctttccactcaaaaccttcttaaaggcattgag
gcatcaaaaagtacatcttttgaaaatgttctttttgctttaggcatacgttatgtagga
aaaacagtagccgagaagctagcccgtcattttggagatatatataagctcgagaaagct
acttttgatgagttggtaaatgtgcctgaaataggagaaaggatcgccctgagtattctc
aacttttttgaagatcaggataatagggatattgtagatgaactcaaagaagctggcttg
cagtttgaaattgtagaagagaaagatcgtcatgaaagcagtatattagaggggaaatcc
tttgtggtttccggtatattccagtcgtttagcagagaagagatcaaagaaaaagtcaga
gctaatggcggacaaattgtgtccgcagtttctggcaaagtagattaccttttggcgggt
gaaaatatgggacctgcaaaacgcaaaaaggcaaaaagtttaggtgtttcaattatttct
gagcaagatttcttaaatatgctaactacttaa
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