Contarinia nasturtii (swede midge): 116343388
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Entry
116343388 CDS
T08003
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116343388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cns03400
]
116343388
Enzymes [BR:
cns01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116343388
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116343388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
mRNA_cap_enzyme
RNA_ligase
BRCT_2
SIR2_2
Motif
Other DBs
NCBI-GeneID:
116343388
NCBI-ProteinID:
XP_031627272
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSANLPNELSALVKFEVLVTRLEVISRHSLKKHAKKERLTRFFEEIARLQRKFVAERGTK
EEASSYPFLRLLLPGYDDKERKAYGMQKAALGDYYVKNLGLNRNSETARQLLIPGTEDYS
EVVYNAIKSRAPQEGNLTVYEVNNYLDLIAEHYQANERNKIHDVFYQLISKMTAIQQKWL
VRMILKKVSCGLSEREILSIYDERAWDLHNKRSLLSDVCAIIDSDTPLDQIDVIEVFKPI
HPMLCERGYVAQIKEMLKEHKYYMDTKMDGERCHLHINGNECQYFSRRCKEIKFGTKNQT
PAKYAYIFRECLSRDVKNAIFDGEMMVYNRVTNTFVKKAENSAAKYLQPNDDQFNICYVI
YDLLYINGKCLIDLPYAERIRKIRTIVKVKKGAVMLCEYEKIRDFEHFLRLFNKSFDTNE
EGIVLKQEESKYKPGHREKGGWFKFKPDYEKGLITDFDLLIIGGYYNDSKTSVDTYLLAV
MKKGINESNKSAVFHSVCKIRNGLSFTDFETINDHIRLKKHEIRKNRQKAMTESPPGLVF
ASANPDFWVEPEHSVVLQIKASELTKTTTYATNYSFRFPRVIQIRWDKSPYDTCTLNEFN
TFCSSGANVVKLTKRHATADDVTGETLPKRAKRINPAPKPSLELISTETKVVDLICNGLE
FVILNTDKTENAISVDDMKKMVERHGGKVVDHPNSSTYVTIIGNEKTAKAKPLIKLKRYN
IAKPKWLVRALGSDQPLIKLIDFTPDDMVYATEALQRKFEEMEEDDEMETAPLVDGHLSK
SFDQVALNNEADPNSVSPLKGLKVFNNNNSVEQNHQKMILEHQAEEEHIDDIYTAVTQVL
EPMETEEQQHHDDIFLMDTQPMQPELVNPPNEIENNGHRSVLENAPPVPEETTNYDELFP
ANSETNKSETTNYDDLFPVNSETNESKLANAPNEIENNGHRSILENAPPVPDETTIVVSS
DDYDDLYPVNSETNESNVNLAHPTNSNPEVQLNENVPDNVKQNETQCQDDMSIFGSCIAY
FYEEESSLVDFVATFAEGILIAGDGIHLQTIEDVQQSEAPLTHIFVSSAEFDRKKFKETV
RSFGTQTLKNVKVMRYQWILDCEEQKKKICDTNYIVSV
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaaatctaccgaatgaattgtcagctctggtgaagttcgaagtattggtcacc
cgacttgaggtgatttcgagacacagcctgaaaaaacatgcaaaaaaagagcgtcttaca
cgattttttgaggaaattgcgcgtttgcaacggaaatttgttgccgagcgtggaactaag
gaggaggctagttcttatccatttttgcgacttttactgcccggatatgacgacaaagaa
cgcaaagcatatggtatgcaaaaggcagctctcggcgattactatgtgaaaaatttgggt
ttgaatagaaacagtgaaaccgcacgacagctgttgataccgggtaccgaagattacagt
gaagtcgtgtacaatgccatcaagtcccgtgcaccacaagaaggaaacctaacggtatac
gaagtcaacaattatcttgatttaattgcggagcactatcaagccaacgagagaaacaaa
attcacgatgtgttctatcaactgatcagtaaaatgacagcaattcaacagaaatggctg
gtgcgaatgattttgaaaaaagtaagctgcggtttgagtgaacgtgaaattttgtccatt
tatgacgaaagagcctgggatctgcacaacaaacgtagtttattgtccgacgtgtgtgca
attatcgattcggatacgccacttgaccaaatcgatgtcatcgaagtattcaaaccgatt
catccgatgctgtgcgaacgtggttatgtggcacaaatcaaagaaatgctgaaagagcat
aaatattacatggataccaaaatggacggtgaacgatgtcatttgcacataaatggcaat
gagtgccaatatttttcacgtcgatgcaaggaaatcaaatttggtaccaaaaatcaaact
ccagcgaaatatgcgtatatttttcgggaatgtttgagtcgagatgtgaagaatgcaata
tttgacggcgaaatgatggtatacaatcgagtaaccaatacttttgtgaagaaagctgaa
aattccgctgcaaaatatcttcaaccaaatgatgatcaattcaatatttgctatgtcatc
tatgatctgctttatatcaatggaaagtgccttatcgatttgccatacgctgagcgtata
cgcaaaatacgaacaattgtaaaagtgaagaaaggtgccgttatgctgtgtgaatacgaa
aaaatacgtgatttcgaacattttttgcgattgtttaacaaatcattcgatacaaacgaa
gaaggtattgttcttaaacaagaagagtccaaatataaaccaggacatcgtgaaaagggt
ggatggttcaagtttaagccggactacgaaaaaggcttgatcactgatttcgatttactc
ataatcggtgggtactacaatgacagcaaaacatcggtagacacatatttactggccgta
atgaaaaagggcatcaatgaaagcaataaatcagccgtctttcattcggtttgtaaaatt
cgcaatggtttgagtttcacagatttcgaaacgataaacgatcacattcggctaaaaaaa
catgaaatccgaaagaatcgacaaaaggcaatgaccgaatctccacccggacttgtattt
gcatcggcaaatccagatttttgggttgaacccgagcattcggttgtacttcaaatcaaa
gctagcgaattgacgaaaaccactacctacgcgaccaattattcttttcgatttcctcgc
gttatccaaattcgatgggataaatcaccgtatgacacatgtactttaaacgaattcaac
acattttgttcgtcaggcgcaaatgttgtaaaactcaccaaacgacatgcaactgcagat
gatgtcactggtgaaacattgccaaagcgagcgaagcgaatcaatcctgcaccaaagcca
tcactggaattaatttccaccgaaaccaaagtagttgacctaatatgtaacgggctcgag
ttcgttattctcaatacagataaaacagaaaatgccatatctgttgatgatatgaaaaag
atggttgaacgtcacggcggaaaagttgtcgatcatccaaatagttcaacgtatgtcacc
atcattggcaatgaaaaaactgcaaaagcaaaaccgttaatcaagttaaaacgttataac
attgcaaaaccaaaatggctggtgcgagcacttggtagtgatcaacctttgataaaattg
attgattttacaccggatgacatggtttatgcaacggaagcacttcaaagaaaattcgaa
gaaatggaggaagatgatgaaatggaaacggcgccattggtcgatggccatttgtcgaag
tcgtttgatcaagtcgctttaaacaatgaagccgatccaaattctgttagccctttgaaa
ggattgaaagtgttcaataataataattctgttgaacagaatcatcagaaaatgattttg
gaacatcaagcagaagaagagcacatcgatgatatttacaccgcagtaacgcaggtcctt
gaacccatggaaactgaggaacaacaacaccatgatgatattttcttgatggatacacag
cccatgcaaccagagttagtcaatccgccgaatgaaatcgagaacaatggtcatcgatca
gttttggaaaatgcacctccggttccagaagaaacgacgaattatgatgaattgttccca
gcaaattcggaaaccaataaatccgaaactaccaactatgatgatttgttcccagtgaac
tcggaaaccaatgaatcaaagttagccaatgcgccgaatgaaatcgaaaacaatggtcat
cgatcaattttggaaaatgcacctcccgttccagatgaaacgacgattgttgtatccagt
gatgattatgatgatttgtatccagtgaactcggaaaccaatgaatctaacgttaatttg
gcgcatccaaccaactcgaatccagaggttcaattgaacgagaatgtccctgacaatgtt
aagcaaaatgaaacccaatgtcaggatgacatgagcatatttggctcttgcatcgcatac
ttttacgaggaagaatcatcattggtagatttcgttgcaacatttgcagaaggcattttg
atagcaggagatggcatacatttgcaaacaatcgaagatgtccaacaatccgaagcacca
ttaacgcacatttttgtgtccagcgccgaattcgatcgcaaaaaattcaaggaaacggta
cgttcgtttggcacgcagacattgaagaacgtcaaagttatgcggtatcaatggatcctt
gattgcgaagagcagaaaaagaaaatttgtgatacaaattacatagttagtgtgtaa
DBGET
integrated database retrieval system
