Campylobacter novaezeelandiae: CNZW441b_0858
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Entry
CNZW441b_0858 CDS
T07570
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cnv
Campylobacter novaezeelandiae
Pathway
cnv03030
DNA replication
cnv03410
Base excision repair
cnv03420
Nucleotide excision repair
cnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNZW441b_0858 (ligA)
03410 Base excision repair
CNZW441b_0858 (ligA)
03420 Nucleotide excision repair
CNZW441b_0858 (ligA)
03430 Mismatch repair
CNZW441b_0858 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnv03032
]
CNZW441b_0858 (ligA)
03400 DNA repair and recombination proteins [BR:
cnv03400
]
CNZW441b_0858 (ligA)
Enzymes [BR:
cnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNZW441b_0858 (ligA)
DNA replication proteins [BR:
cnv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNZW441b_0858 (ligA)
DNA repair and recombination proteins [BR:
cnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNZW441b_0858 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNZW441b_0858 (ligA)
MMR (mismatch excision repair)
DNA ligase
CNZW441b_0858 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNZW441b_0858 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
BRCT_2
HHH_5
SeqA_N
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QWU80173
LinkDB
All DBs
Position
complement(829950..831890)
Genome browser
AA seq
646 aa
AA seq
DB search
MTKEEYLEKVKLANLWMRAYYEKDEPLASDEEYDNLIKELKKFESENPNLLLKDSPTQKI
APTIQSEFKKISHLSPMWSMEDVFNEDELKAWAKRARSENNFFIEPKFDGASLNLVYENG
KLISGATRGDGKIGEDITLNVLEIDSIPKNIPYLEKIEIRGEVVILKDDFEKINEKRANL
NQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGQNSLKFSKHSEIMEFVRNLGFLK
DDFVRLCKDLNEVMIAYRELLNLRDKKPMMMDGMVVRVDDLNLCNELGYTVKFPRFMAAF
KFPALEKTTRLIGVNLQVGRSGVITPVAILEPVNLDGVIVKSATLHNFDEIARLDVKIND
YVSIIRSGDVIPKITKVFKERRDSLELNILRPKICPTCQSELLDEGALIKCQNIDCEDRL
LNSIIHFVSKKCLNIDGLGESIVELLYKNKKITTIESIFYLKISDFEGLEGFREKKINNI
LNAIENAKNCDLYRFITALGIEHIGEVAAKKLSLSFGFDWHKQSLESYENLEGFGNQMAL
SLCEFIRVNHQRIDNFYKILNLRLDQNEIQNDSKIIGKTFVITGTLSRPRDEFKALIESL
GGKVSSSVSKKTNFVLYGEEAGSKLDKARELNITCIDENAFNELIK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagaagaatatttagaaaaagtaaaattagcaaatctttggatgagggcttat
tatgaaaaagatgagcctttagcgagtgatgaagaatatgataatttaatcaaagagctt
aaaaaatttgaaagcgaaaatcctaatttattacttaaagactctcctacacaaaaaatc
gctccaaccatacaaagtgagtttaaaaaaatttctcatttaagccctatgtggtcaatg
gaagatgtttttaacgaagatgaattaaaagcatgggcaaaaagagcaagaagtgaaaat
aatttttttatagagcctaaatttgatggagcaagtttaaatttggtttatgaaaatggc
aaattaataagtggagctacaagaggagatggaaaaataggagaagatataacgctaaat
gttttagaaattgatagtattccaaaaaatattccttatttagaaaagatagaaattcgt
ggtgaagtagtaattttaaaagatgattttgaaaagattaatgaaaaaagagcaaattta
aatcaaagcttgtttgcaaatcctagaaatgcagcaagtgggagtttaagacagcttgat
acaagtattaccaaagaaagaaatttaaaattttatccttggggagtagggcaaaacagt
cttaaatttagcaaacattcagagattatggaatttgtaagaaatcttggttttttaaaa
gatgattttgtaaggctttgtaaggatttaaatgaagtaatgattgcttatagagagctt
ttaaatttaagagataaaaaacctatgatgatggatggtatggttgtaagggttgatgac
ttaaatctttgcaatgagcttggatatacagtgaaatttcctagatttatggcagctttt
aaattccctgcacttgaaaaaaccacgcgtttaataggtgtaaatttgcaagtgggaagg
agtggggttataacacctgtggcgattttagagcctgtaaatttagatggggttatagtt
aaatccgcaacacttcataattttgatgagatagcaagacttgatgtaaaaattaatgat
tatgtaagtattataagaagtggtgatgttatacctaagattactaaggtttttaaagag
cgtcgagatagtttagaacttaatattttgcgtccaaaaatttgtcctacatgtcaaagt
gagcttttagatgagggtgctttgataaaatgtcaaaatattgattgcgaggatagactt
ttaaattcaatcattcattttgtctctaaaaaatgtttaaatatagacggacttggagaa
agtatagtagagcttttatataaaaataaaaaaattactacaattgagagtattttttat
ttaaaaattagcgattttgaaggtttagagggttttagggaaaaaaagattaacaatata
ttaaatgccattgagaatgcaaaaaactgcgatctttatcgttttattacggctttgggt
attgagcatattggagaagtagcggctaaaaaattaagtcttagttttggatttgattgg
cataaacaaagcttagaaagttatgaaaatttagaaggctttggaaatcaaatggcttta
agtctttgtgaatttatacgtgttaatcatcaaagaattgataatttttataaaatttta
aatttaagattggatcaaaatgaaatacaaaatgatagtaaaattataggtaaaactttt
gtcattacaggaacactttcacgtcctagagatgaatttaaagctttaatagaaagttta
ggtggcaaggtgagtagttctgtttctaaaaaaacaaattttgttctttatggagaagag
gctggctctaaattagataaagcaagggagcttaatataacttgtatagatgaaaatgcc
tttaatgagcttataaaatga
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