Cobetia sp. 4B: H2O77_01860
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Entry
H2O77_01860 CDS
T09692
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cobb
Cobetia sp. 4B
Pathway
cobb03030
DNA replication
cobb03410
Base excision repair
cobb03420
Nucleotide excision repair
cobb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H2O77_01860 (ligA)
03410 Base excision repair
H2O77_01860 (ligA)
03420 Nucleotide excision repair
H2O77_01860 (ligA)
03430 Mismatch repair
H2O77_01860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobb03032
]
H2O77_01860 (ligA)
03400 DNA repair and recombination proteins [BR:
cobb03400
]
H2O77_01860 (ligA)
Enzymes [BR:
cobb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H2O77_01860 (ligA)
DNA replication proteins [BR:
cobb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H2O77_01860 (ligA)
DNA repair and recombination proteins [BR:
cobb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H2O77_01860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H2O77_01860 (ligA)
MMR (mismatch excision repair)
DNA ligase
H2O77_01860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H2O77_01860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF7560
Big_3
Motif
Other DBs
NCBI-ProteinID:
QWN37287
LinkDB
All DBs
Position
405949..408147
Genome browser
AA seq
732 aa
AA seq
DB search
MSAQDDLFSAPADDSNASSASRSAAPTAVEGVPAKVMEEVAQLHRELLEASHRYYVLDDP
TLTDADYDTRLRRLEALEAEYPQLISSESPTQRVGAAPASGFEEVQHAVPMLSLNNAFDD
DELRAFVQRAAKTLELGDAQDAGDELSFCCEPKLDGLAVSLIYENGVLVQGVTRGDGRTG
EGITTNLRTIRSIPLKLRGDDLPELLEVRGEVYMSHAGFEALNARGRDEDGKVFANPRNA
AAGSLRQLDSNIAASRPLEFCAYQVARVDDALLASEAGQNHSGLMALLNDYGFRTSPQLE
VVRGAQGIIDYTRRLGEQRDGLDHDIDGAVIKLDALRLQRELGFVARAPRWAIAYKYPAQ
EQETTLEGVDFQVGRTGALTPVARLAPVQVAGVVVSNATLHNMDEVERLGVQIGDSVIIR
RAGDVIPQVVRVASEGASREAIVLPDGCPVCGSDIERLEGEVVARCAGGLICAAQRKEAL
KHFSSRKALDVDGLGEKLIEQLIERELVKTPADLFHLEAATLAELPRMGEKSAANLVASL
DKSRNTTLARFIYALGIREVGEATAANLATHFGTLEALRAADQAALEAVEDVGPIVAAHI
HTFFQQPTNNETLEALLACGLSWEEVEIGERPQPLAGQTWVLTGSLDSMTRDEGKARLQA
LGAKVAGSVSKKTAGVVAGEAAGSKLEKAMQLGLTVLDEETFVKRLAEWESGADAQQDNP
QDSAQDSAGEDA
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcccaggatgatctgttttcggcgcctgccgatgattccaacgcctcgagcgct
tcccgctccgctgcaccgaccgcggtggaaggcgtgcctgccaaggtgatggaggaggtc
gcgcagctgcatcgcgagctgcttgaggccagccaccgctattacgtgctggatgatccg
acgctgaccgatgccgactacgacacgcgcctgcgccgtctcgaggcgctggaagccgaa
tatccccagctgatcagctcggaatcgcccacccagcgcgtcggagccgcaccggccagc
ggcttcgaggaagtgcagcatgcggtgccgatgctgtcgctcaacaacgccttcgatgac
gatgagctgcgcgccttcgtgcaacgtgcggcgaaaacgctggagctgggagacgcccag
gatgcgggtgacgagctgagcttctgctgcgagcccaagctcgatggcctggccgtgtcg
ctcatctacgagaatggcgtgctggtgcagggcgtgacgcgcggcgatggccgcaccggc
gaaggcatcaccaccaatctgcgcaccattcgctcgatcccgctcaagctgcggggtgat
gatctgccggagctgctggaagtgcgcggcgaggtctacatgagccacgctggcttcgag
gcgctgaacgcgcgcggccgcgacgaggatggcaaggtgttcgccaacccgcgcaatgcc
gccgccggcagcctgcgccagctggattccaacatcgccgcctcgcgtccgctggaattc
tgcgcctatcaggtcgcgcgggtggatgatgcgctgctcgccagcgaggccggccagaat
cattccggtctgatggcgctgctcaacgactatggcttccgtaccagcccgcagcttgag
gtggtgcgcggcgctcagggcatcatcgactacacccgccgcctcggcgagcagcgtgat
ggcctcgatcacgatatcgatggcgcggtaatcaagctcgatgcactgcgtctgcagcgt
gaactgggcttcgtggcgcgcgccccgcgctgggccatcgcctacaagtacccggcgcag
gagcaggaaaccaccctggaaggcgtcgattttcaggtcggacgcactggcgcgctgaca
ccggtcgcccggctggcaccggtgcaggtcgccggcgtggtggtctccaacgccacactg
cacaacatggatgaggtggagcgtctcggcgtgcagatcggtgacagcgtcatcattcgg
cgcgccggcgatgtcatcccgcaggtggtgcgggtcgccagtgaaggtgccagccgtgaa
gccatcgtgctgccggacggctgcccggtgtgcggctccgacatcgagcgcctcgaaggc
gaggtggtggcacgctgcgcgggcggactgatctgcgccgcgcagcgcaaggaagccctc
aagcacttctccagtcgcaaggcgctggatgtcgatggactcggcgagaagctgatcgag
cagctgatcgaacgtgagctggtcaagacgccggcggacctgttccatctggaagctgcc
accctggctgagctgccgcgcatgggcgagaagtccgccgccaatctggtcgcctcgctg
gacaagagccgcaacaccaccctggcacgcttcatctacgccctcggcattcgggaagtc
ggtgaagccaccgccgcgaatctggccacgcacttcggcacgcttgaagcgctgcgcgca
gcggatcaggccgcgctggaggcagtggaagatgtcggccccatcgtcgccgcgcatatc
cataccttcttccagcagccgaccaacaacgagacgctggaagcgttgctcgcctgtggt
ctgagctgggaagaggtcgaaatcggtgagcgcccccagccgctggcaggccagacctgg
gtgctgaccggcagcctcgacagcatgacgcgtgatgaaggcaaggcgcgtctgcaggcg
ctgggcgccaaggtggcgggcagtgtctcgaagaagaccgccggtgtagtcgccggcgag
gcagcgggcagcaagctcgagaaagccatgcagctgggcctcacggtgctggacgaagag
accttcgtgaagcgcctggccgaatgggaatccggtgctgatgcacagcaggacaatccg
caagacagtgcgcaagacagcgcgggagaggatgcatga
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