Cobetia sp. cqz5-12: F8A90_01885
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Entry
F8A90_01885 CDS
T10568
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03030
DNA replication
cobc03410
Base excision repair
cobc03420
Nucleotide excision repair
cobc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F8A90_01885 (ligA)
03410 Base excision repair
F8A90_01885 (ligA)
03420 Nucleotide excision repair
F8A90_01885 (ligA)
03430 Mismatch repair
F8A90_01885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobc03032
]
F8A90_01885 (ligA)
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_01885 (ligA)
Enzymes [BR:
cobc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F8A90_01885 (ligA)
DNA replication proteins [BR:
cobc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F8A90_01885 (ligA)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F8A90_01885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F8A90_01885 (ligA)
MMR (mismatch excision repair)
DNA ligase
F8A90_01885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F8A90_01885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF7560
Big_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QQK65752
LinkDB
All DBs
Position
405294..407384
Genome browser
AA seq
696 aa
AA seq
DB search
MEEVAQLHRELLDASHRYYVLDDPTLTDADYDTRLRRLEALEAEYPQLISSESPTQRVGA
APASGFEEVQHAVPMLSLNNAFDDDELRAFVQRAAKTLELGDAQDAGNELSFCCEPKLDG
LAVSLIYENGVLVQGVTRGDGRTGEGITTNLRTIRSIPLKLRGDDLPALLEVRGEVYMSH
AGFEALNARGRDEDGKVFANPRNAAAGSLRQLDSNIAASRPLEFCAYQVARVDDALLASE
AGQNHSGLMALLNDYGFRTSPQLEVVRGAQGIIDYTRRLGEQRDGLDHDIDGAVIKLDAL
RLQRELGFVARAPRWAIAYKYPAQEQETTLEGVDFQVGRTGALTPVARLAPVQVAGVVVS
NATLHNMDEVERLGVQIGDSVIIRRAGDVIPQVVRVASEGASREAIVLPDGCPVCGSEIE
RLEGEVVARCAGGLICAAQRKEALKHFSSRKALDVDGLGEKLIEQLIERELVKTPADLFH
LGAATLAELPRMGDKSAANLVASLDKSRNTTLARFIYALGIREVGEATAANLATHFGTLE
ALRAADQAALEAVEDVGPIVAAHIHTFFQQPTNNETLEALLACGLSWEEVEIGERPQPLA
GQTWVLTGSLDSMTRDEGKARLQALGAKVAGSVSKKTAGVVAGEAAGSKLEKAMQLGLTV
LDEATFVARLAEWESGADARQDNPQDSAQDSAGEDA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggttgcgcagctgcatcgcgagctgcttgatgccagccaccgctattacgtg
ctggatgatccgacgctgactgatgctgactacgacacgcgcctgcgacgtctcgaagcg
ctggaagccgaatatcctcagctgatcagctcggaatcgcctacccagcgtgtcggagcc
gcgccggccagcggcttcgaggaagtgcagcatgcggtgccgatgctgtcgctcaacaac
gccttcgatgacgatgagctgcgagccttcgtgcagcgtgcggcgaaaacgctggagctg
ggagacgcccaggatgctgggaatgaactgagcttctgctgcgagcccaagctcgatggc
ctggccgtgtcgctcatctatgagaacggcgtattggtgcagggcgtgacgcgcggcgat
ggccgcaccggcgaaggcatcaccaccaatctgcgcaccatccgctcgattccgctcaag
ctgcggggtgatgatctgccggcgctgctggaagtacgtggcgaggtctacatgagccac
gctggcttcgaggcgctgaacgcgcgcggccgcgacgaggatggcaaggtgttcgccaac
ccgcgcaatgccgcggccggtagcctgcgccagctggattccaacatcgccgcttcgcgt
ccgctggaattctgcgcctatcaggtcgcgcgggtagatgatgcattgctcgccagcgag
gccggccagaatcattccggtctgatggcgctgctcaacgactatggcttccgcaccagc
ccgcagcttgaggtggtgcgcggcgctcagggcatcatcgactacacccgccgcctcggc
gagcagcgcgatggcctcgatcacgacatcgatggcgcggtcatcaagctcgatgcactg
cgtctgcagcgtgaactgggcttcgtggcgcgcgcaccgcgctgggccatcgcctacaag
tacccggcgcaggagcaggaaaccaccttggaaggtgttgatttccaggtcggacgcact
ggcgcgctgacaccggtcgcccgtctggcaccggtgcaggtcgccggtgtggtggtctcc
aacgccacgctgcacaacatggacgaggtggagcgtctcggcgtacagatcggtgacagc
gtcatcatccgccgcgccggcgatgtcatcccgcaggtggtgcgggtcgccagtgaaggt
gccagccgcgaagccatcgtgctgccggacggctgcccggtgtgtggctccgagatcgag
cgcctcgaaggcgaggtggtggcacgctgcgcgggcggactgatctgcgccgcgcagcgc
aaggaagccctcaagcacttctccagccgcaaggcgctggatgtcgatggtctcggtgag
aagctgatcgagcagctgatcgaacgcgagctggtcaagacgccggcggatctgttccac
ctgggagctgccaccctggccgagctgccgcgcatgggcgataagtccgccgccaatctg
gtcgcctcgctggacaagagccgcaacaccaccttggcgcgcttcatctacgccctcggc
atccgggaagtcggggaagccaccgccgcgaatctggccacgcacttcggtacgcttgaa
gcgctgcgcgcagccgatcaagccgcgctggaggcagtggaagatgtcggccccatcgtc
gccgcgcatatccataccttcttccagcagccgaccaacaacgagacgctggaagcgttg
ctcgcctgtggcttgagctgggaagaggtcgagatcggtgagcgtccccagccgctggca
ggccagacctgggtgctgaccggcagcctcgacagcatgacgcgcgatgaaggcaaggcg
cgtctgcaggcgctgggcgccaaggtggcgggcagtgtctcgaagaagaccgctggcgta
gtcgccggcgaggctgcaggcagcaagctggagaaagcgatgcagctgggcctcacggtg
ctggacgaagcgaccttcgtggcgcgcttggccgaatgggaatccggggctgatgcacgg
caggacaatccgcaagacagtgcgcaagacagcgcgggagaggatgcatga
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integrated database retrieval system