KEGG   Cobetia sp. cqz5-12: F8A90_01885
Entry
F8A90_01885       CDS       T10568                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cobc  Cobetia sp. cqz5-12
Pathway
cobc03030  DNA replication
cobc03410  Base excision repair
cobc03420  Nucleotide excision repair
cobc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cobc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    F8A90_01885 (ligA)
   03410 Base excision repair
    F8A90_01885 (ligA)
   03420 Nucleotide excision repair
    F8A90_01885 (ligA)
   03430 Mismatch repair
    F8A90_01885 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cobc03032]
    F8A90_01885 (ligA)
   03400 DNA repair and recombination proteins [BR:cobc03400]
    F8A90_01885 (ligA)
Enzymes [BR:cobc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     F8A90_01885 (ligA)
DNA replication proteins [BR:cobc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     F8A90_01885 (ligA)
DNA repair and recombination proteins [BR:cobc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     F8A90_01885 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     F8A90_01885 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     F8A90_01885 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      F8A90_01885 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia HHH PTCB-BRCT 5_3_exonuc DUF7560 Big_3 Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: QQK65752
LinkDB
Position
405294..407384
AA seq 696 aa
MEEVAQLHRELLDASHRYYVLDDPTLTDADYDTRLRRLEALEAEYPQLISSESPTQRVGA
APASGFEEVQHAVPMLSLNNAFDDDELRAFVQRAAKTLELGDAQDAGNELSFCCEPKLDG
LAVSLIYENGVLVQGVTRGDGRTGEGITTNLRTIRSIPLKLRGDDLPALLEVRGEVYMSH
AGFEALNARGRDEDGKVFANPRNAAAGSLRQLDSNIAASRPLEFCAYQVARVDDALLASE
AGQNHSGLMALLNDYGFRTSPQLEVVRGAQGIIDYTRRLGEQRDGLDHDIDGAVIKLDAL
RLQRELGFVARAPRWAIAYKYPAQEQETTLEGVDFQVGRTGALTPVARLAPVQVAGVVVS
NATLHNMDEVERLGVQIGDSVIIRRAGDVIPQVVRVASEGASREAIVLPDGCPVCGSEIE
RLEGEVVARCAGGLICAAQRKEALKHFSSRKALDVDGLGEKLIEQLIERELVKTPADLFH
LGAATLAELPRMGDKSAANLVASLDKSRNTTLARFIYALGIREVGEATAANLATHFGTLE
ALRAADQAALEAVEDVGPIVAAHIHTFFQQPTNNETLEALLACGLSWEEVEIGERPQPLA
GQTWVLTGSLDSMTRDEGKARLQALGAKVAGSVSKKTAGVVAGEAAGSKLEKAMQLGLTV
LDEATFVARLAEWESGADARQDNPQDSAQDSAGEDA
NT seq 2091 nt   +upstreamnt  +downstreamnt
atggaggaggttgcgcagctgcatcgcgagctgcttgatgccagccaccgctattacgtg
ctggatgatccgacgctgactgatgctgactacgacacgcgcctgcgacgtctcgaagcg
ctggaagccgaatatcctcagctgatcagctcggaatcgcctacccagcgtgtcggagcc
gcgccggccagcggcttcgaggaagtgcagcatgcggtgccgatgctgtcgctcaacaac
gccttcgatgacgatgagctgcgagccttcgtgcagcgtgcggcgaaaacgctggagctg
ggagacgcccaggatgctgggaatgaactgagcttctgctgcgagcccaagctcgatggc
ctggccgtgtcgctcatctatgagaacggcgtattggtgcagggcgtgacgcgcggcgat
ggccgcaccggcgaaggcatcaccaccaatctgcgcaccatccgctcgattccgctcaag
ctgcggggtgatgatctgccggcgctgctggaagtacgtggcgaggtctacatgagccac
gctggcttcgaggcgctgaacgcgcgcggccgcgacgaggatggcaaggtgttcgccaac
ccgcgcaatgccgcggccggtagcctgcgccagctggattccaacatcgccgcttcgcgt
ccgctggaattctgcgcctatcaggtcgcgcgggtagatgatgcattgctcgccagcgag
gccggccagaatcattccggtctgatggcgctgctcaacgactatggcttccgcaccagc
ccgcagcttgaggtggtgcgcggcgctcagggcatcatcgactacacccgccgcctcggc
gagcagcgcgatggcctcgatcacgacatcgatggcgcggtcatcaagctcgatgcactg
cgtctgcagcgtgaactgggcttcgtggcgcgcgcaccgcgctgggccatcgcctacaag
tacccggcgcaggagcaggaaaccaccttggaaggtgttgatttccaggtcggacgcact
ggcgcgctgacaccggtcgcccgtctggcaccggtgcaggtcgccggtgtggtggtctcc
aacgccacgctgcacaacatggacgaggtggagcgtctcggcgtacagatcggtgacagc
gtcatcatccgccgcgccggcgatgtcatcccgcaggtggtgcgggtcgccagtgaaggt
gccagccgcgaagccatcgtgctgccggacggctgcccggtgtgtggctccgagatcgag
cgcctcgaaggcgaggtggtggcacgctgcgcgggcggactgatctgcgccgcgcagcgc
aaggaagccctcaagcacttctccagccgcaaggcgctggatgtcgatggtctcggtgag
aagctgatcgagcagctgatcgaacgcgagctggtcaagacgccggcggatctgttccac
ctgggagctgccaccctggccgagctgccgcgcatgggcgataagtccgccgccaatctg
gtcgcctcgctggacaagagccgcaacaccaccttggcgcgcttcatctacgccctcggc
atccgggaagtcggggaagccaccgccgcgaatctggccacgcacttcggtacgcttgaa
gcgctgcgcgcagccgatcaagccgcgctggaggcagtggaagatgtcggccccatcgtc
gccgcgcatatccataccttcttccagcagccgaccaacaacgagacgctggaagcgttg
ctcgcctgtggcttgagctgggaagaggtcgagatcggtgagcgtccccagccgctggca
ggccagacctgggtgctgaccggcagcctcgacagcatgacgcgcgatgaaggcaaggcg
cgtctgcaggcgctgggcgccaaggtggcgggcagtgtctcgaagaagaccgctggcgta
gtcgccggcgaggctgcaggcagcaagctggagaaagcgatgcagctgggcctcacggtg
ctggacgaagcgaccttcgtggcgcgcttggccgaatgggaatccggggctgatgcacgg
caggacaatccgcaagacagtgcgcaagacagcgcgggagaggatgcatga

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