Cardiocondyla obscurior: 139113305
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Entry
139113305 CDS
T10704
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139113305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139113305
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139113305
Complex C
U5 SnRNP specific factors
139113305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139113305
NCBI-ProteinID:
XP_070530459
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All DBs
Position
LG02:complement(13167325..13172028)
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AA seq
981 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASESEDENEYGNIGDDAEDRERSDEEMEEEKDESREQVDQGSS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLVAPTRKTKFQIKQQQLPETTY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVQQTHPHIHSITDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLVNIFDTPGHVNFSDEATAAIRLSDGAILIVDAAE
GVMLNTERLLKHAIQEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLISLYS
SDTENPGFVSPAVGNVCFASSEYNVCFTLKSFAALYAKNYPGLNANEFAKRLWGDIYFNP
KTRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMN
IRPLLRLVCTRFLGDMCGLADMCVTHVPSPQAHASTKVQHVYTGPMDTPLAQDMVNCDPD
GRLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLW
ISEARYSIELSRVPAGNWVLIEGIDRPIVKTSTITDLNNSEELHIFRPLKFNTQSVIKIA
VEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEI
DIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNK
KRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQ
WGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPY
LFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHT
QGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINK
FFDDPMLLELARQDVLLNYPL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggatttgtacgatgagttcgggaattacattgggcctgatttggcatcggaa
agcgaggatgaaaatgaatacgggaatattggcgacgatgccgaggacagagaacgatcc
gacgaggagatggaagaagagaaagatgaatctcgcgagcaagtggaccagggatcttct
atggcagttgtattgcatgaagataaacgatactatcctagtgcattagaggtgtatgga
cccgaggttgaaacgcttgtgcaagaagaagatgcccagccgttagataaaccactagtt
gcacccactagaaaaacaaagtttcaaatcaaacagcagcagctacctgaaaccacatac
agtattgaatttttggcagatatgatggatgcgccgcatcttattagaaatgtagtgttg
ttgggacatcttcatcatggcaaaactactttggtcgactgtttggtgcagcaaacacat
cctcacatacacagcataactgatgagaagccattgagatatacagatacattatttacc
gaacaacaaagaggcgtctccacaaaagctactcctgttactcttttactacaagatgtt
aaatctaaatcgtatctcgtaaatatatttgacactccgggtcacgtaaatttttctgac
gaagcaacagccgcgattagactgtcggatggcgcgatattgatcgtcgatgcggcggaa
ggcgtgatgctgaacaccgagcgtttgctgaagcacgcaattcaagaaaagcttgccttg
acagtttgcataaataaaatagatcgtttggtattggagttgaaactaccacccttggac
gcttactacaaactgcgacatattatcgaagagattaacggattaatatcgttgtactcc
tcggacaccgagaatcctggtttcgtttcgcctgctgtaggaaatgtttgtttcgcaagt
tctgaatacaacgtgtgctttactttgaagtcgttcgctgcgctctacgccaaaaactat
cccggacttaatgccaacgagttcgctaagcgactctggggtgatatttatttcaatcct
aaaactaggaagttcactaaaaagccaccacataataccgcacaacgaagctttatcgaa
tttatcttggaacctctgtataagatatttgcacaagttgttggtgatgtagacacaaca
ttacctgatgttttggatgaactcggtatacgattgacatcagaggagatgaaaatgaat
atacgaccattgctgagacttgtctgcacgagatttttaggagatatgtgcggattagca
gacatgtgtgtcactcacgtaccgagcccgcaagctcacgcatctactaaagtacagcac
gtttataccggcccgatggacacgcctcttgcgcaagacatggttaattgtgatcctgac
ggaagactgatgatccatagtacaaagatgtatccaactgaagattgtaccttatttgta
gttcttggtagagtaatgtctggtacgttggaagcaggacaacgcgttcgcgtactaggt
gaagcatattcacgcacagacgaggaggattcacgtgttctcacagtaggcagattgtgg
attagcgaggcacgttactcgattgagttgagtcgcgtgcccgcgggcaactgggttctc
atagaaggtatcgatcgaccaatcgtaaaaactagcactatcacggatcttaacaactcg
gaagaattgcacatttttcggccacttaagtttaacacgcagagcgttatcaaaatcgcc
gttgaaccggtcaacccgtccgaattaccgaagatgttggatggtttgcgaaaggtgaac
aagagttatccactgctgggtacacgggtggaagaaagtggtgagcatgtcgtattggga
accggcgaactttacctcgattgtgcaatgcatgatctacgtcgcatgtattccgagatc
gatataaaggtagctgatccagtagtcgcctttgcggagactgtcgtggagaccagttct
ctcaaatgtttcgccgaaacgccaaataagcggaataagttaacaatgatagcggagcca
cttgagagaggtctcgccgaagacatagaagccgaacatgttcgcattacttggaacaaa
aagagactcggagagtttttccaaacgaaatatgattgggatttattagcagcgcggagc
atatgggcatttggccctgattctacaggacccaacattttagtcgatgacactttgcct
tctgaagtagacaaaacattgttaaacagcgcgcgcgatgcaattattcaaggctttcaa
tggggaactcgcgaaggtccgttgtgtgaagaaccgatccgaaatgtcaagttcaaaatt
cttgatgcagtcattgcacaggaaccactgcatagaggaggtggtcaaatcattcctact
gctcgacgtgtcgcgtactctgcttttcttatggcgacaccgcgactgatggaaccttat
ctattcgtcgaagttcaagcacccgcggattgcgtgtccgctgtctacacagtcttggcg
aaacgacgaggtcacgtaacgcaagacgctccggttccgggcagtccattgtacacaatc
aaggccttcataccagcgatcgacagtttcggcttcgaaacagatctacggacgcacact
cagggccaagcgttctgtctttctgtgtttcaccattggcagattgtacctggggatcct
ctggacaagagcatcaccatcagaccattagaaccgcagcctgccacccatctagctaga
gagtttatgttgaaaactcgaagacgcaaagggctgtctgaagacgtgtccattaacaaa
ttctttgacgatcctatgctgctcgagttggcccgacaggatgtgctactaaactatccc
ctgtaa
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