Cardiocondyla obscurior: 139113555
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Entry
139113555 CDS
T10704
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139113555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139113555
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139113555
Complex C
U5 SnRNP specific factors
139113555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139113555
NCBI-ProteinID:
XP_070530892
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All DBs
Position
LG02:complement(6249546..6254110)
Genome browser
AA seq
981 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASESEDENEYGNIGDDAEDRERSDEEMEEDKDESREQVDQGSS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRKTKFQIKQQQLPETTY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVQQTHPHIHSITDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLVNIFDTPGHVNFSDEATAAIRLSDGAILIVDAAE
GVMLNTERLLKHAIQEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLISLYS
SDTENPGFVSPAVGNVCFASSEYNVCFTLKSFAALYAKNYPGLNSNEFAKRLWGDIYFNP
KTRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMN
IRPLLRLVCTRFLGDMCGLADMCVTHVPSPQAHASAKVQHVYTGPMDTPLAQDMVNCDPD
GRLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLW
ISEARYSIELSRVPAGNWVLIEGIDRPIVKTSTITDLNNSEELHIFRPLKFNTQSVIKIA
VEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEI
DIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNK
KRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQ
WGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPY
LFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHT
QGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINK
FFDDPMLLELARQDVLLNYPL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggatttgtacgatgagtttggaaattacattggacctgatttggcatcggaa
agcgaggatgaaaatgaatacgggaatattggcgacgatgccgaggacagggaacgatcc
gacgaggagatggaagaagacaaagatgaatctcgcgagcaagtggaccagggatcttct
atggcagttgtattgcatgaagataaacgatactatcctagtgcattagaggtgtatgga
cccgaggttgaaacgcttgtgcaagaggaagatgcccagccgttagataaaccactaatt
gcacccactcgaaaaacaaagtttcaaatcaaacagcagcagctgcctgaaaccacatac
agtattgaatttttggcagatatgatggacgcgccgcatcttattagaaatgtagtgttg
ttgggacatcttcatcatggcaaaactactttggtcgactgtttggtgcaacaaacacat
cctcacatacacagcataactgacgagaagccattgagatatacagatacattgtttacc
gaacaacagagaggcgtctccacaaaagctactcctgttactcttttactacaagatgtt
aaatctaaatcgtatctcgtaaatatatttgacactccgggtcacgtaaatttttctgac
gaagcaacagccgcgattagactgtcggatggcgcgatattgatcgtcgatgcggcggag
ggcgtgatgctgaacaccgagcgtttgctgaagcacgcaattcaagaaaagcttgccttg
acagtttgcataaataaaatagatcgtttggtattggagttgaaactaccacccttggac
gcttactacaaactgcgacatattatcgaagagattaacggattaatatcgttgtactcc
tcggacaccgagaatcctggtttcgtttcgcccgctgtaggaaatgtttgtttcgcaagt
tctgaatacaacgtgtgctttactttgaagtcgttcgctgcgctctacgccaaaaactat
cccggactcaattccaacgagtttgctaagcgactctggggtgatatttattttaatcct
aaaactaggaagttcactaaaaagccaccacataataccgcacaacgaagctttatcgaa
tttatcttggaacctctgtataagatatttgcacaagttgtcggtgatgtagacacaaca
ttacctgatgttctggatgaactcggtatacggttgacatcagaggagatgaaaatgaat
atacgaccattactgagacttgtctgcacgagatttttaggagatatgtgtggattagca
gacatgtgtgtcactcacgtaccaagcccgcaagctcacgcatctgctaaagtacagcac
gtttataccggcccaatggacacgcctcttgcgcaagacatggttaattgtgatcctgac
ggaagactgatgatccatagtacaaagatgtatccaactgaagattgtaccttatttgta
gttcttggtagagtaatgtctggtacgttggaagcaggacaacgcgttcgcgtactaggt
gaagcatattcacgcacagacgaggaggattcacgtgttctcacagtaggcagattgtgg
attagcgaggcacgttactcgattgagttgagtcgcgtgcccgcgggtaactgggtcctc
atagaaggtatcgatcgaccaatcgtaaaaactagcactatcacggatcttaacaactcg
gaagaattgcacatttttcgaccacttaagtttaacacgcagagtgttatcaaaatcgcc
gttgaaccggtcaatccgtccgaattaccgaagatgttggatggtttgcgaaaagtgaac
aagagttatccactgctgggtacacgagtggaagaaagtggtgagcatgtcgtattggga
accggcgaactttatctcgattgtgcaatgcatgatctacgtcgcatgtattccgagatc
gatataaaggtagctgatccagtggtcgcctttgcggagactgtcgtggagaccagttct
ctcaaatgtttcgccgaaacgccaaataaacggaataagttaacaatgatagcggaacca
cttgagagaggtctcgccgaagacatagaagccgaacatgttcgcattacttggaacaaa
aagagactcggagaatttttccaaacaaaatatgattgggatttattagcagcgcgcagc
atatgggcatttggccctgattctacaggacctaatattttagtcgatgacactttgcct
tctgaagtagacaaaacattgttaaacagcgcgcgcgatgcaattattcaaggctttcaa
tggggaactcgcgaaggtccgttgtgtgaagaaccgatccgaaatgtcaagttcaaaatt
cttgatgcagtcattgcacaggagccactgcacagaggaggtggtcaaatcattcctact
gctcgacgtgtcgcgtactctgcttttcttatggcgacgccacgactgatggaaccttat
ctgttcgtcgaagttcaagcacccgcggattgcgtgtccgctgtctacaccgtcttggcg
aaacgacgaggtcacgtaacgcaagacgctccggttccgggcagtccattgtacacaatc
aaagccttcataccagcgatcgacagtttcggcttcgaaacagatctacggacgcacact
cagggccaagcgttctgtctttctgtgtttcaccattggcagattgtacctggggatcct
ctggacaagagcatcaccatcagaccattagaaccgcagcctgccacccatctggctaga
gagtttatgttgaaaactcgaagacgtaaagggctgtctgaagacgtgtctattaataaa
ttctttgacgatcctatgctgctcgagttggcccgacaggatgtgctattaaactatccc
ctgtaa
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