Capnocytophaga ochracea: Coch_1559
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Entry
Coch_1559 CDS
T00961
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03030
DNA replication
coc03410
Base excision repair
coc03420
Nucleotide excision repair
coc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Coch_1559
03410 Base excision repair
Coch_1559
03420 Nucleotide excision repair
Coch_1559
03430 Mismatch repair
Coch_1559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coc03032
]
Coch_1559
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_1559
Enzymes [BR:
coc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Coch_1559
DNA replication proteins [BR:
coc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Coch_1559
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Coch_1559
NER (nucleotide excision repair)
GGR (global genome repair) factors
Coch_1559
MMR (mismatch excision repair)
DNA ligase
Coch_1559
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Coch_1559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
Zn_Ribbon_TF
RNA_pol_A_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ACU93104
UniProt:
C7M6X8
LinkDB
All DBs
Position
complement(1853004..1854992)
Genome browser
AA seq
662 aa
AA seq
DB search
MKEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG
GSVTKSFPTVIHEYRMYSLDNSYSKEDLEEWEQRIIKTLGSDQINFTCELKYDGASIDLL
YENGKLKQATTRGDGIQGDDITANVRTIRSVPLQLKGDYPERFYIRGEIVMPKKAFESLN
KERTAAGEDPFMNPRNTASGSLKLQDTAEVAKRGLDCLLYFLVGNTGIKSQFESLEKARE
WGFKVPNISKLCHSTAEVMDFINEWDTKRHTLPYETDGVVVKVDSIAQQEELGYTSKSPR
WAMAYKFKAEQVDTVLESISYQVGRTGAITPVANLKPVLLAGTVVKRASLHNADQIEKLD
IRIGDSVYVEKGGEIIPKIVGVNLDKREADAQPVKYITHCPECGTELVRNEGEAQHYCPN
AYGCPPQITGKIQHFISRKAMDIEGLGEETVEQLFRAGIIHTYADLYEVTVEKLLPLERM
AQKSAENIVKGIQKSKEIPFERVLFALGIRYVGETVAKKLARHYKTIEALENATIEQLVE
VDEIGNQIASSIVNFFADDYNRQLIDRLKGYGLQFSINEQATEGQTDTLKGLTFVVSGVF
HLYSREELKALIEQHGGKVGSSISSKTNYVIVGDNMGPSKKEKAEQLGVKMISEEEFNAM
IL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaagatacaacaacttcgggaggaactcaatgagcacaattataactactat
gtgctggacaatcctacgatttcggattatgagttcgaccaaaagcttaaagaactacaa
gccttagagcaagcatacccagagttttacgatgagaattcgcctactgtacgcgtggga
ggttctgttactaaaagttttccaaccgtaatacacgaataccgtatgtactcgttagat
aactcttattctaaggaagacttagaggaatgggaacagcgtattatcaagacgttgggc
agtgaccaaattaactttacttgcgaactgaaatacgacggtgcttctatagatttgttg
tacgaaaatggcaagcttaaacaagctactactcgtggtgatggtattcaaggtgacgat
attaccgccaatgtgcgtacgattcgttcagtacccttgcaactaaaaggcgattatcct
gaacgtttttacattcgcggggagatagtaatgcctaaaaaagcctttgaaagccttaat
aaggaacgtacagcagctggcgaagacccttttatgaaccctcgtaacaccgccagcggt
agtctcaaattgcaagatactgccgaggttgctaaacgaggtttagattgcttgttgtac
tttttggtagggaacacaggtataaagagtcagtttgagagtttagaaaaagcgcgcgaa
tggggctttaaagtacctaatatttccaaattgtgccattctactgccgaagtaatggac
tttatcaacgaatgggataccaaacgccacactttgccttatgaaactgatggagtagtg
gtaaaggtagatagtattgcccagcaagaagagttggggtatacttcaaaatcgccgcgt
tgggcaatggcttacaagttcaaagcagaacaagtagacactgttttagagagtatttcc
taccaagtgggacgtacaggagctattactccggtggcaaatctcaaacccgtgttacta
gcgggaacggtagtaaaacgtgcttcattgcataatgctgaccagattgaaaagctcgat
attcgcataggcgactcggtatatgtagaaaaaggcggggagattatccctaaaattgta
ggcgtgaacttagataagcgcgaagcagatgctcagcccgtgaaatatatcacccattgt
cctgaatgtggtaccgaattggtgcgcaacgaaggcgaagcgcaacactactgtcctaat
gcttatggctgtccgccccagattacaggtaagattcaacattttatctcacgcaaagca
atggatatagaaggcttaggtgaagagacagtagaacaactcttccgtgccggtattatc
catacttatgctgacctctacgaggtaaccgtagagaaattgctccccttagagcgtatg
gcacaaaagagtgctgagaatattgttaaaggtattcagaaatcaaaagaaatacctttt
gaacgcgtgctttttgctttggggattaggtatgtaggtgagactgttgccaagaagctg
gcacgccactacaaaacgattgaagccctagaaaatgccactatcgaacagttggtggaa
gtagatgaaatagggaaccaaatagccagcagtatagtaaacttcttcgctgatgactac
aaccgtcaactcatcgataggctcaaaggctatggtttgcagttttcaattaatgaacaa
gctaccgaaggtcaaactgataccctcaaagggcttacctttgtggtttctggggtcttt
cacttgtattcacgggaggaactcaaagcccttattgaacaacacggaggtaaagtaggg
tcatctatctcttctaaaactaattacgtgatagtaggcgataatatgggaccaagtaag
aaagaaaaagccgagcaattaggtgtgaagatgattagtgaagaagaatttaatgcaatg
attttgtaa
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