Corynebacterium pseudotuberculosis 1/06-A: Cp106_0852
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Entry
Cp106_0852 CDS
T02052
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03030
DNA replication
cod03410
Base excision repair
cod03420
Nucleotide excision repair
cod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cp106_0852 (ligA)
03410 Base excision repair
Cp106_0852 (ligA)
03420 Nucleotide excision repair
Cp106_0852 (ligA)
03430 Mismatch repair
Cp106_0852 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cod03032
]
Cp106_0852 (ligA)
03400 DNA repair and recombination proteins [BR:
cod03400
]
Cp106_0852 (ligA)
Enzymes [BR:
cod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cp106_0852 (ligA)
DNA replication proteins [BR:
cod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cp106_0852 (ligA)
DNA repair and recombination proteins [BR:
cod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cp106_0852 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cp106_0852 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cp106_0852 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cp106_0852 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AER68931
LinkDB
All DBs
Position
900208..902292
Genome browser
AA seq
694 aa
AA seq
DB search
MVQLPLKLNTNDKLDIVTDSNIELRRQWDELAEQVRYHRDAYYNDTPEISDQDFDALFRT
LQKLEEEHPELAVPDSPTLEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRTP
AQAYLTELKIDGLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFP
IPELLEVRGEVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMI
CHGLGATQGFTPASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEM
DGVVVKVDSISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMR
PVFVAGSTISMATLHNQTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREFIF
PTLCPSCGTRLAPQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKAAEDLI
RTGVLIDEAGLFELTEEDLLKTRVYTTKKKTLNATGSKLLANLEQSKKADLWRVLVALSI
RHVGPTAARALASRYHSMDALREASAEEIADTEGVGAIIAQSFKDWFEVDWHAHIVEQWA
RAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASTSVSKKTDYVV
VGENAGSKETKARELGLTILDESGFIQLLENGSV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaacttccgctgaagttaaataccaacgataaactagatatcgtgactgattcc
aatatcgaactccgcagacaatgggacgaactcgctgaacaagtgcgatatcatcgtgat
gcgtattataacgacacacctgagatcagtgaccaagattttgatgcgttgttccggacg
ctccaaaagcttgaagaggaacaccccgaactcgcagttccagacagccccacgctagaa
gtcggagcccctgtggctttgagctctagttttaataatgtagagcacctggaacgcctc
atgagcttagataatgtgtttgacgccgcagagctttctgagtggttgcaaagaacaccg
gcgcaggcttatctaaccgagctgaagatcgatggactttcactagaccttatttaccgc
gatggaaaattatggcgtgcggctactaggggcgacggcaggatcggtgaagacgtcacc
gaaaacgcaaaagtgattgctgacgtgccgcatcgacttaaggaaaacgcagagtttcct
atccctgaactgctggaggttcgaggtgaagtttttatcgctgtagaagactttgctgcg
gttaatgaacaacgccaattggaggggggaaaaccctttgctaatccgcgcaatgcggct
gccggctcattaagacaaaaagacgttgaagctgttaaaaaacgcaggcttcggatgatc
tgtcatggacttggtgctactcagggttttactcccgcgtcgcagtaccatgcatatgag
gcattggcagcttggggcttgcctgtttctccttataccgagcttgtccagtcagccgca
gaagtgcaggaaaaggttctatattgggccgagcatcgccacgacgcagcgcatgagatg
gatggagttgtagttaaggtagacagcatctcagagcaacgagcgttgggggctacagcc
cgagctccgcgctgggccatcgcctacaaatacccgccagaagaagttacaacggaactc
ttagacattcaggtaggagtgggcaggaccgggcgtgttactccctttgccgttatgcgt
ccagtttttgtcgccggatctactatctctatggctacgctgcacaaccaaacggaagta
aaacgtaaaggagtgctcatcggggacaccgtggtgatccgcaaagcaggtgaggtgatc
ccagaagttcttgggccggtagtggaaaaacgagacgggactgagcgcgagtttattttc
cctactttgtgtcctagctgtggtacccggcttgcgccgcaaaaagaggacgatgcggat
tggcgctgccctaattctcaatcgtgcccggcgcagttgagcacgcgtttaacctatcta
gcaggacgcggcgcttttgacattgaagctttaggagaaaaagcagcggaggatctcatc
cgtacaggagtgcttatcgacgaagctgggttgtttgagcttacagaagaagacctacta
aagactcgtgtgtacacaacaaagaagaagacgctgaatgcgactggctccaagttgtta
gccaacttggagcaatcgaaaaaagctgatctttggcgggtgcttgtcgcgctatctatt
agacacgttggtcccaccgctgcccgggcattagcgtcccgttatcactctatggacgca
ttgcgagaagccagcgcggaagagattgcggatactgaaggcgttggagcgatcatcgca
caaagttttaaagattggtttgaagttgattggcacgcccacatcgtagagcagtgggca
cgtgctggtgtgacgatggccgaagagacctcccaattgccggagcaaacactggcgggt
atgactgttgtggtcactggttctttggaaggctttagtcgcgattctgccaaggaagcc
atcatcagtcgtggcggtaaagcctcaacatcggtgtctaaaaaaaccgattatgttgtg
gttggagaaaatgccggttctaaggaaactaaagcaagagaactaggactcaccattctt
gacgagtccggttttatccaactactagaaaacggatcggtataa
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