Comamonas odontotermitis: LAD35_09150
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Entry
LAD35_09150 CDS
T07833
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03030
DNA replication
codo03410
Base excision repair
codo03420
Nucleotide excision repair
codo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAD35_09150 (ligA)
03410 Base excision repair
LAD35_09150 (ligA)
03420 Nucleotide excision repair
LAD35_09150 (ligA)
03430 Mismatch repair
LAD35_09150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
codo03032
]
LAD35_09150 (ligA)
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_09150 (ligA)
Enzymes [BR:
codo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LAD35_09150 (ligA)
DNA replication proteins [BR:
codo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAD35_09150 (ligA)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LAD35_09150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAD35_09150 (ligA)
MMR (mismatch excision repair)
DNA ligase
LAD35_09150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAD35_09150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UBB18769
LinkDB
All DBs
Position
1965875..1968001
Genome browser
AA seq
708 aa
AA seq
DB search
MADTFDLFSTPVHATKAQAAIKIKALRDQLVRWAHEYYVLDTPSVPDGEYDRVYRELEAL
EKAHPELVTPDSPTQRVIGAVLDGLTPVRHAVPMLSIRTETDNEASGAEAFDTRIRKELG
LDASAPPVEYVAEPKFDGLAMNLRYENGLLVQATTRGDGEIGEDVTHNIRTIRQIPLSLP
QNAGVPPVLEVRGEVYMRRDDFDALNRKQEAAGGKTFVNPRNAAAGAVRQLDSNITAQRP
LSFFAYGVGEVTPANRGGPDWQSHYAMLMQIKAWGFPVAPQVCLARGAGELVAFHQRMGA
ERGSLGYEIDGVVYKVNSRAQQRELGFVSREPRWAVAHKYPAQEMVTRLEGIDVQVGRTG
KLTPVARLAPVFVGGVTVTNATLSNVFDIRKKGVRVGDQVIVRRAGDVIPEVVGRVAPVP
GTDAALQPGPRSPYVPNFHMSVACPICGSAVVREKGEANHRCTGGLFCPAQRKEAILHFA
ARRAMDIEGLGDKLVDQLVDAGVIRTLPDLYKLGIATLSGLERMAEKSAQNVLAALESSK
KTSLQRFLFGLGIRHVGESTARDLAKHFGVLDAIMDASVEALLQVNDVGPVVAQSIHTFF
AQPHNREVVEQLRAAGVHWDEGAPAEKPPQILAGMTVVLTGTLPTMGRDEAKDLLEAAGA
KVSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLQLLKTGQV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggctgatacttttgatcttttttcgactccggtgcacgctacaaaggcgcaggcagct
atcaaaataaaagcgctgcgcgaccagctggtccgctgggcgcacgaatactatgtgctc
gacacgccgagcgtgcccgatggcgaatacgaccgcgtctaccgggagctggaagcgctg
gagaaggcgcaccccgaactggtgacgcccgattcgcccacccagcgggtgattggcgcg
gtgctcgacggcttgacaccggtgcgccacgcggtgcccatgctcagcatccgcaccgaa
acagacaacgaggccagtggtgcggaggctttcgatacgcgcatccgcaaggagctgggg
cttgatgcttcggccccgcccgtggaatacgtggccgagcccaagttcgatggccttgcc
atgaacctgcgctacgaaaacggcctgctggtgcaggccaccacacgcggggacggcgag
attggcgaggacgtgacgcacaacatccgcaccatccgccagataccgctcagcctgcca
cagaacgcgggcgtgcccccggtgctggaagtgcggggcgaagtctatatgcgccgcgat
gacttcgatgcgctcaaccgcaagcaggaggccgcaggcggcaagaccttcgtcaacccg
cgcaacgcggcggcaggggcggtgcgccagctcgattccaacatcaccgcgcagcgcccg
ctgtcattctttgcctatggcgtgggtgaagtcacgcctgctaaccggggtgggccggac
tggcagagccactacgccatgctgatgcagatcaaggcctggggttttccggtggcgcca
caagtctgccttgcacgcggagcgggcgaactggtcgcctttcaccagcgcatgggcgca
gagcggggcagcctgggctacgagatcgacggcgtggtatacaaggtcaacagccgggcg
caacagcgcgagctgggttttgtcagccgcgagccgcgctgggccgtcgcgcacaaatac
ccggcgcaagagatggtgacgcgcctggagggcattgacgtccaggtgggccgcaccggc
aagctcacgcctgtggcgcgcctggctcccgtgtttgtgggcggtgtcaccgtcaccaat
gccaccttgtcgaatgtctttgacatccgcaagaagggcgtgcgcgtgggcgatcaggtg
atcgtgcgccgcgcgggcgatgtgattcccgaggtggtgggccgcgtcgctcctgtgccg
ggtaccgatgcggctttgcagccggggccgcgtagcccttatgtgcccaactttcacatg
tctgtcgcatgccccatctgcggcagcgccgtggtgcgcgagaagggcgaggccaaccac
cgatgcaccggcggcctgttctgccccgcgcagcgcaaggaggccatcctgcactttgcc
gcccgccgcgcgatggacattgaaggcctgggcgacaagctggttgatcagcttgtcgac
gccggtgtgatccgcaccttgcccgatttgtacaaactggggatcgccaccttgtcgggc
ctggagcgcatggccgagaaatctgcacagaacgtgctggcggcgctggaatcatccaag
aagaccagcctgcagcgctttctgttcggcctggggatacgccatgtgggcgaatccacc
gccagggacctggccaagcactttggtgtgctcgatgcgatcatggacgcctcggttgaa
gcgctgctgcaggtgaacgacgtgggcccggtggtggcgcagagcatccacacctttttt
gcgcaaccgcacaaccgcgaggtggtggagcaactgcgcgctgccggcgtgcactgggac
gagggcgcgcccgccgagaagccgccgcagatcctcgctggcatgacggtggtgttgacc
ggcaccctgccgaccatgggccgcgacgaggccaaggacctgctggaagctgctggtgcc
aaggtctcaggctcggtcagcaagaaaaccagctatgtggtggcgggcgccgaggccggc
agcaagctggccaaggccgaagaactgggtgtgcccgtgcttgacgaggcaggcatgctg
cagttgctgaaaaccggtcaggtttga
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