Cohnella sp. LGH: J4772_32830
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Entry
J4772_32830 CDS
T10185
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03030
DNA replication
cohl03410
Base excision repair
cohl03420
Nucleotide excision repair
cohl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4772_32830 (ligA)
03410 Base excision repair
J4772_32830 (ligA)
03420 Nucleotide excision repair
J4772_32830 (ligA)
03430 Mismatch repair
J4772_32830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cohl03032
]
J4772_32830 (ligA)
03400 DNA repair and recombination proteins [BR:
cohl03400
]
J4772_32830 (ligA)
Enzymes [BR:
cohl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4772_32830 (ligA)
DNA replication proteins [BR:
cohl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4772_32830 (ligA)
DNA repair and recombination proteins [BR:
cohl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4772_32830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4772_32830 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4772_32830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4772_32830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
YiiM_3-alpha
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QTH46861
LinkDB
All DBs
Position
complement(7956047..7958065)
Genome browser
AA seq
672 aa
AA seq
DB search
MELLERMRNLVDELNAHGHRYYTEDNPTVSDKEYDALYDELTALEASMGTVLPDSPTRRV
GGDILKGFEPHRHLSRLWSLDKAQDIEDLTAWLARVNKLIADYNAKNPEQPLPDPEYVVE
LKFDGLSLNLTYDGGELTQAATRGNGEVGEGILAQVRTIRTVPLTVGYNGGTVEVQGEGF
MRLSVLEKYNETAAEPLKNARNGAAGALRNLDPRVTASRKLDAFFYNVGYSDGISFANHR
EMMAFLRENKFPVNPYIAYFSNVDDLVKELESIVARRGELDYLIDGAVVKLTDMRTREAL
GYTDKFPRWAVAFKFEAEETTTVLESVSWELGRTGKVTPLARVEAVELAGVTVQNCTLNN
IGDIERKNLLNALGTRVFIRRSNDVIPEILGKADDEEGAAIAVPEVCPGCGFPLEMRGAH
LFCNNRLGCKPQIIGRITHFASRDCMDIETFSGKTAEQLYDELGVREPADLYSLTLEQLV
GLQRFGAKKASNLLDALEKSKSRGLASFLNALGIPNTGKATTKMLADHFGDLDRLMAAEV
EELIGLPDVGGIVAESIYYYFRDPLNEASIARMRELGVRAEAAAPAAASADANHPLFGKT
VVLTGTLTLMTRDEAAKKLEALGAKVSGSVSKKTDLVIAGESAGSKLTKARDLGVPVLED
EEELVRLLGGTE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaattgctggaacggatgcggaacctcgtggacgagttaaacgcgcatggccatcgt
tattatacggaggataatccgacggtcagcgacaaggaatacgatgctctctacgacgaa
ttgaccgctctcgaagcgtcgatgggcacggtattgccggactccccgacgcgtagagtc
ggcggagacattctgaaaggctttgagcctcaccgccatttgtcccggctgtggagcctg
gataaagcgcaggatatcgaggatctgactgcatggctggcgcgcgtcaataagctgatt
gccgactacaacgccaaaaatccggaacagccgctccctgatccggagtacgtcgtcgag
ctgaagttcgacggactgtcgcttaatctgacttatgacggcggggagttgacgcaggcc
gcgacgagagggaacggagaagtcggagaaggcatcttggcccaggttcgtacgattcgg
accgttcctctgacggtcgggtacaatggcggaacggtcgaggttcaaggcgagggcttt
atgcggctctccgtgctggaaaagtataacgaaacggcggcggagccgcttaagaacgca
cgcaacggcgccgccggggcgctccgcaacctcgacccgagggtgacggcttcgcgcaag
ctggacgcgttcttctacaacgtcggttattcggacggaatttcgttcgccaaccaccgc
gagatgatggcgttcctgcgggaaaataagtttccggtgaatccgtacatcgcctatttt
tcgaatgtggacgaccttgttaaggagcttgagtcgatcgtcgcacgtcgcggagagctg
gattatttgatcgacggagcggtcgtcaagctgaccgatatgagaacgcgcgaggcgctt
ggttatacggacaaatttcctcgttgggccgtcgccttcaaattcgaggccgaggaaacg
acaaccgtgctcgagtccgtctcttgggagctgggccgtacaggcaaagtgactccgctt
gctcgcgtggaggctgtcgagttggccggagtgaccgtgcaaaattgtacgctcaacaac
atcggcgacatcgaacggaaaaacttgctgaatgcgctcggaacgagggtctttattcgc
cgttccaatgacgttattccggaaatactcggcaaggcggatgacgaggaaggagcggcg
atcgccgttcccgaggtatgtcccggctgcggcttcccgcttgagatgcgcggagctcat
ctgttctgcaacaatcgtctcggctgcaagccgcaaattatcggacgaatcacccatttt
gcttcgcgcgattgcatggatatcgagacgttcagcggtaagacggcggagcagttgtat
gatgagctcggcgttcgggagcctgctgatctgtacagcctgacactggagcagttggtc
ggattgcagcggttcggagcaaagaaggcgtccaacttgctcgatgcgctggagaagtcg
aagtcccgcggactcgcttcgttcctgaacgcgctcggcattccgaatacgggcaaggcg
acgacgaaaatgctggccgatcatttcggggacctggatcgcctgatggccgcggaagtg
gaagaattgatcggcttgccggacgtcggcggcatcgtcgctgagagcatctattactac
ttccgcgacccgcttaatgaagcgagcatcgcccggatgcgcgagcttggcgtgagggcg
gaagctgccgccccggccgctgcgagcgcggacgcgaaccatcctctcttcggcaaaacg
gttgtgctaaccggtacgttaacgctgatgacgcgggacgaagccgccaaaaagctggaa
gcgctcggtgcaaaggtgtcgggcagcgtatccaagaaaaccgacctcgtcattgcgggc
gagagcgccggcagcaagctgaccaaggcgcgcgacctcggcgttcccgtgctggaggat
gaggaagagttggttcgccttctcggcggcacggaatag
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