Cohnella abietis: KCTCHS21_54850
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Entry
KCTCHS21_54850 CDS
T05979
Symbol
ligA2
Name
(GenBank) DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cohn
Cohnella abietis
Pathway
cohn03030
DNA replication
cohn03410
Base excision repair
cohn03420
Nucleotide excision repair
cohn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCTCHS21_54850 (ligA2)
03410 Base excision repair
KCTCHS21_54850 (ligA2)
03420 Nucleotide excision repair
KCTCHS21_54850 (ligA2)
03430 Mismatch repair
KCTCHS21_54850 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cohn03032
]
KCTCHS21_54850 (ligA2)
03400 DNA repair and recombination proteins [BR:
cohn03400
]
KCTCHS21_54850 (ligA2)
Enzymes [BR:
cohn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KCTCHS21_54850 (ligA2)
DNA replication proteins [BR:
cohn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KCTCHS21_54850 (ligA2)
DNA repair and recombination proteins [BR:
cohn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KCTCHS21_54850 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCTCHS21_54850 (ligA2)
MMR (mismatch excision repair)
DNA ligase
KCTCHS21_54850 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCTCHS21_54850 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
ITAM
Motif
Other DBs
NCBI-ProteinID:
BBI36086
UniProt:
A0A3T1DD60
LinkDB
All DBs
Position
complement(6196026..6198050)
Genome browser
AA seq
674 aa
AA seq
DB search
MAQTGFLERMQELVAELNAHSHRYYTEDNPTISDKEYDVLYDELSQLEAVSGSILPDSPT
RRVGGDILKGFEPHRHLSRLWSLDKAQNTEDLVAWAARVNRLITDYNSKNTDDPLPAPEY
VVELKFDGLSLNLTYENGELAQAATRGNGEIGEGILAQARTIRTVPLTIGFGEGTIEVQG
EGFMRLSVLEEYNKTAAEPLKNARNGAAGALRNLDPRITASRKLDAFFYNVGFSENVSFA
NHREMMSFLRENKFPVNPYNAYFTTMEEVIVELEAVVERRGHLDYLIDGAVIKLTDMRTR
DALGYTDKFPRWAVAFKFEAEETTTVLESVSWELGRTGKVTPLARVEAVELAGVTVQNCT
LNNVGDIERKNLSHALGTRVFIRRSNDVIPEILGKADDEEGQTIEIPIVCPGCGSPLEMR
GAHLFCNNRLGCKPQIIGRITHFASRDCMDIETFSGKTAEQLYEELNVREPADLYSLNYD
DLVKLQRFGEKKATNLLAALEKSKSRELSSFLNALGIPNTGKATTKMLAEHFGDLDRLMA
SEVDELVGLPDVGGIVAESIFNYFRDPIALASIARMRELGMKAEASRPAAASADANHPLF
GKTVVLTGTLSVMTRDEAAQKLEALGAKVSGSVSKKTDLVIAGESAGSKLTKARDLGVPV
LEDQEELLRLLGGQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaccggatttctagagcggatgcaggagctcgtcgctgagcttaacgcgcat
agccatcgatactatacagaagacaatccaacgatcagcgataaagaatatgatgtcctt
tatgatgagctttcgcagctagaggcagtcagtggatcgattttgccggactctccgact
cgaagagttggtggtgatatccttaagggattcgaaccgcatcgccatctttcccgactt
tggagcttggacaaggcgcagaatactgaggatttagttgcttgggctgcgagagtcaat
cgactaattacggactacaattccaagaacacggatgatccacttcctgctcccgaatac
gtagtggaattaaagttcgatgggctatccttaaacctaacctatgagaacggtgagtta
gcccaagccgcaacgagaggtaatggtgagataggggaaggcattcttgcccaagctcgc
acgattcgcacagtaccacttacaatcggctttggagaaggaacgattgaggtgcaggga
gaaggctttatgcgtttgtctgtgcttgaggaatataacaaaacagctgctgaacccctt
aagaacgctcgtaatggagctgcaggtgctttgcggaatctagatcctcgaattacggcg
tctcgcaaattggatgctttcttctataatgtcgggttttctgaaaatgtttcttttgcc
aaccatcgtgaaatgatgagcttcttgcgagaaaataagttccccgttaatccgtataat
gcctattttacgacaatggaagaagtaattgttgagctagaggcagttgtcgagcgacgt
ggacacttggattacttaattgatggagcggttattaagctgactgatatgagaacaagg
gatgctttgggttatacggacaaattccctcgttgggctgtcgcctttaaatttgaggca
gaggaaacgacgacggtactagaatctgtatcctgggaattagggagaacgggtaaggta
actccacttgctcgtgtagaagcagttgagctcgctggtgttaccgtacagaattgcaca
ctcaacaatgtcggtgatattgaacgcaaaaatctttctcatgcattggggacaagagta
tttattcggcgctccaacgacgttattcctgagattctgggtaaagcggatgatgaagaa
ggccaaacaatcgagattccaatcgtttgtcccggttgtggatctcctttggaaatgagg
ggggcgcatctgttctgtaacaatcgtttaggatgcaagccacagatcattggacggatc
actcatttcgcatctcgcgattgcatggacattgagacattcagcgggaagactgcggag
caattgtacgaggaactaaatgttcgcgagccggctgatttgtacagcttaaattatgat
gatttggttaagctccaacgctttggagaaaagaaggcgactaacctgctggcagcgctg
gagaaatcgaaatcgcgggagctatcttcttttctaaatgccttgggtattcccaatacg
ggaaaagctacgactaaaatgctagcagagcattttggcgatttggataggttaatggct
tcagaggttgatgagcttgttggattaccggacgtcggtggcattgttgcggagagtatc
ttcaactatttccgcgatccaattgcattagcaagcatcgcccgcatgcgcgagcttggc
atgaaagctgaggcatctcgtccagcggctgcttcagcagatgcgaatcatcctctgttt
ggtaaaacggtcgtactgactggaacactgtcggttatgacacgagatgaagctgcccag
aagctagaagcgcttggagctaaagtgtcaggtagtgtatcaaagaaaacagatctagtt
attgcaggagaaagtgctggaagtaagctaacaaaggcacgtgatctaggcgttcctgta
ctagaggatcaagaagaattgctacgacttctcggaggccaataa
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