Corynebacterium pseudotuberculosis CIP 52.97: CPCIP5297_04530
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Entry
CPCIP5297_04530 CDS
T02054
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
coi
Corynebacterium pseudotuberculosis CIP 52.97
Pathway
coi03030
DNA replication
coi03410
Base excision repair
coi03420
Nucleotide excision repair
coi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
coi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPCIP5297_04530 (ligA)
03410 Base excision repair
CPCIP5297_04530 (ligA)
03420 Nucleotide excision repair
CPCIP5297_04530 (ligA)
03430 Mismatch repair
CPCIP5297_04530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coi03032
]
CPCIP5297_04530 (ligA)
03400 DNA repair and recombination proteins [BR:
coi03400
]
CPCIP5297_04530 (ligA)
Enzymes [BR:
coi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPCIP5297_04530 (ligA)
DNA replication proteins [BR:
coi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPCIP5297_04530 (ligA)
DNA repair and recombination proteins [BR:
coi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPCIP5297_04530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPCIP5297_04530 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPCIP5297_04530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPCIP5297_04530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEQ06425
LinkDB
All DBs
Position
949093..951129
Genome browser
AA seq
678 aa
AA seq
DB search
MTDSNIELRRQWDELAEQVRYHRDAYYNDTPEISDQDFDALFRALQKLEEEHPELAVPDS
PTLEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRTPAQAYLTELKIDGLSLD
LIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFPIPELLEVRGEVFIAVE
DFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATQGFTPASQY
HAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDSISEQRAL
GATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTISMATLHN
QTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREFIFPTLCPSCGTRLAPQKE
DDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKAAEDLIRTGVLIDEAGLFELTE
EDLLKTRVYTTKKKTLNATGSKLLANLEQSKKADLWRVLVALSIRHVGPTAARALASRYH
SMDALREASAEEIADTEGVGAIIAQSFKDWFEVDWHAHIVEQWARAGVTMAEETSQLPEQ
TLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASTSVSKKTDYVVVGENAGSKETKARELG
LTILDESGFIQLLENGSV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgactgattccaatatcgaactccgcagacaatgggacgaactcgctgaacaagtgcga
tatcatcgtgatgcgtattataacgacacacctgagatcagtgaccaagattttgatgcg
ttgttccgggcgctccaaaagcttgaagaggaacaccccgaactcgcagttccagacagc
cccacgctagaagtcggagcccctgtggctttgagctctagttttaataatgtagagcac
ctggaacgcctcatgagcttagataatgtgtttgacgccgcagagctttctgagtggttg
caaagaacaccggcgcaggcttatctaaccgagctgaagatcgatggactttcactagac
cttatttaccgcgatggaaaattatggcgtgcggctactaggggcgacggcaggatcggt
gaagacgtcaccgaaaacgcaaaagtgattgctgacgtgccgcatcgacttaaggaaaac
gcagagtttcctatccctgaactgctggaggttcgaggtgaagtttttatcgctgtagaa
gactttgctgcggttaatgaacaacgccaattggaggggggaaaaccctttgctaatccg
cgcaatgcggctgccggctcattaagacaaaaagacgttgaagctgttaaaaaacgcagg
cttcggatgatctgtcatggacttggtgctactcagggttttactcccgcgtcgcagtac
catgcatatgaggcattggcagcttggggcctgcctgtttctccttataccgagcttgtc
cagtcagccgcagaagtgcaggaaaaggttctatattgggccgagcatcgccacgacgca
gcgcatgagatggatggagttgtagttaaggtagacagcatctcagagcaacgagcgttg
ggggctacagcccgagctccgcgctgggccatcgcctacaaatacccgccagaagaagtt
acaacggaactcttagacattcaggtaggagtgggcaggaccgggcgtgttactcccttt
gccgttatgcgtccagtttttgtcgccggatctactatctctatggctacgctgcacaac
caaacggaagtaaaacgtaaaggagtgctcatcggggacaccgtggtgatccgcaaagca
ggtgaggtgatcccagaagttcttgggccggtagtggaaaaacgagacgggactgagcgc
gagtttattttccctactttgtgtcctagctgtggtacccggcttgcgccgcaaaaagag
gacgatgcggattggcgctgccctaattctcaatcgtgcccggcgcagttgagcacgcgt
ttaacctatctagcaggacgcggcgcttttgacattgaagctttaggagaaaaagcagcg
gaggatctcatccgtacaggagtgcttatcgacgaagctgggttgtttgagcttacagaa
gaagacctactaaagactcgtgtgtacacaacaaagaagaagacgctgaatgcgactggc
tccaagttgttagccaacttggagcaatcgaaaaaagctgatctttggcgggtgcttgtc
gcgctatctattagacacgttggtcccaccgctgcccgggcattagcgtcccgttatcac
tctatggacgcattgcgagaagccagcgcggaagagattgcggatactgaaggcgttgga
gcgatcatcgcacaaagttttaaagattggtttgaagttgattggcacgcccacatcgta
gagcagtgggcacgtgctggtgtgacgatggccgaagagacctcccaattgccggagcaa
acactggcgggtatgactgttgtggtcactggttctttggaaggctttagtcgcgattct
gccaaggaagccatcatcagtcgtggcggtaaagcctcaacatcggtgtctaaaaaaacc
gattatgttgtggttggagaaaatgccggttctaaggaaactaaagcaagagaactagga
ctcaccattcttgacgagtccggttttatccaactactagaaaacggatcggtataa
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