Colwellia sp. Arc7-D: DBO93_16190
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Entry
DBO93_16190 CDS
T05422
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola00300
Lysine biosynthesis
cola00550
Peptidoglycan biosynthesis
cola01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DBO93_16190
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DBO93_16190
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cola01011
]
DBO93_16190
Enzymes [BR:
cola01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
DBO93_16190
Peptidoglycan biosynthesis and degradation proteins [BR:
cola01011
]
Precursor biosynthesis
Amino acid ligase
DBO93_16190
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
NAD_binding_5
Hydrolase_6
Secretin_N
Motif
Other DBs
NCBI-ProteinID:
AWB58941
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Position
complement(3761609..3763207)
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AA seq
532 aa
AA seq
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MFDHALTVSTAPTNFAAIEAVLSFGEITLAPNDLTQLATQFSQNFNSTRANLVNDTRALI
SGDVFCAVIGSLRDGREYTVQALSANCAMILQETTESSEHGKLTWLGQASGQETPVLSYF
QLNDNLFNVAKVFYGEPQKLLNIIGITGTNGKTSTSQIIANLLDSCQKNCAVIGTNGAGK
LAQLHTIENTTPGATELHQLLALFADNKITDVAMEVSSHALAQKRVNATLFNTAVFTNLS
RDHLDYHQTMAAYAEAKKAIFTGDNKQVAVINGDDAQAQKWLENWPSTQAVVVYGRDANV
ASYQRFAQALDVKHYPQGVSFQLVTDQGKCEINSQLLGDFNVENLLAAIAVLMVEKIALA
TIAKAITQLVPIIGRMESFSLQGKPTAVVDYAHTPDALASALDACRLHCQGKLWLVFGCG
GDRDTGKRALMAKVAESKADCMIITNDNPRSEDPEAIAADIIAGLDKNTRFEKILDRATA
VSTALQQADANDVVLCAGKGHEDYIIFGNEKRHYDERAVVKAFYSSEKEVTV
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatcacgctttaaccgtttctactgcaccgacaaattttgccgccattgaagcg
gttttaagctttggtgaaattacgcttgcgcctaatgatttaacgcaattagcaacacag
ttttctcaaaactttaactcaactagagctaatttagtcaacgacacaagggcgttaata
tcgggcgatgttttttgcgcggttattggcagtttacgtgacggccgtgaatatacggta
caggcgttatcggcgaattgtgcaatgatattacaagaaacaactgagtcgtccgaacat
ggcaaattgacatggcttggacaagcctcaggtcaagaaacgccagtattaagttatttc
cagctgaatgataatttgttcaatgttgcaaaagtattttatggcgaaccgcaaaaattg
ttaaatattattggaattaccggtactaatggtaaaaccagcacgagccaaattattgcg
aacttactcgatagttgtcagaaaaactgtgcagttattggcaccaatggcgcgggtaag
ttggcacaattacatacgattgaaaacaccacgccgggcgcaactgagttgcatcaattg
ttggcgttatttgccgacaataaaattacagatgttgctatggaagtatcttcgcatgct
ttagcgcaaaaacgtgttaatgcaaccttatttaataccgccgtttttacaaatttgagt
cgtgaccatttagattatcatcaaaccatggccgcttatgctgaagcaaaaaaagctata
ttcactggcgataataagcaagtagcggtgatcaatggcgacgacgcgcaagcacaaaaa
tggttagaaaattggccaagtacacaagctgttgttgtttacggacgagacgccaatgtt
gctagttatcagcgcttcgcacaagcactagatgttaaacattatcctcaaggtgttagt
tttcagctggttactgaccaaggcaaatgtgaaattaacagccaattattaggtgacttt
aacgttgagaacttgcttgctgctattgccgtgttaatggtcgaaaaaatagcccttgcg
acaattgctaaagcgattactcagcttgtgcccattattggtcgcatggagtcattttcc
ttacaaggtaagcctacagccgtagttgattacgcgcataccccagatgcattagctagc
gctttagatgcttgccgattacattgccaaggtaagttatggttagtatttggttgcggt
ggtgacagagatacaggcaaaagagcgttaatggctaaagttgccgaaagcaaagcagat
tgcatgatcattaccaatgacaacccgcgcagcgaagaccctgaagccatagctgcagat
attattgcagggttagataaaaatacacgttttgaaaaaatactagatagagcaacggca
gtatccacggctttacaacaagcggatgccaatgatgttgtgctttgcgctggaaaaggc
catgaagattacattatttttggtaatgaaaaacgccattatgacgaacgtgcagtagtt
aaagcattctactcttcagaaaaagaggtaacggtatga
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