Collinsella sp. zg1085: KPC83_01325
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Entry
KPC83_01325 CDS
T09607
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
coll
Collinsella sp. zg1085
Pathway
coll03030
DNA replication
coll03410
Base excision repair
coll03420
Nucleotide excision repair
coll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPC83_01325 (ligA)
03410 Base excision repair
KPC83_01325 (ligA)
03420 Nucleotide excision repair
KPC83_01325 (ligA)
03430 Mismatch repair
KPC83_01325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coll03032
]
KPC83_01325 (ligA)
03400 DNA repair and recombination proteins [BR:
coll03400
]
KPC83_01325 (ligA)
Enzymes [BR:
coll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPC83_01325 (ligA)
DNA replication proteins [BR:
coll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPC83_01325 (ligA)
DNA repair and recombination proteins [BR:
coll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPC83_01325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPC83_01325 (ligA)
MMR (mismatch excision repair)
DNA ligase
KPC83_01325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPC83_01325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
HHH_8
zf-NADH-PPase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QWT17828
UniProt:
A0A975SDY1
LinkDB
All DBs
Position
331814..334027
Genome browser
AA seq
737 aa
AA seq
DB search
MSAMSDMPDLFSSQTSTDLPLPSHDEAAARAAELRNLLDYHAYRYYQLDAPEISDAAFDQ
LLIELQQLESSYPDLITPESYTQRVGGYVAEQFSPVTHLERMYSMDDAMNIEELDEWLTR
TEEALGAGSVTYTCELKIDGLGVALTYENGAFVRAATRGDGTTGEDVSLNIRTVRDVPMH
LSESALAHMGAERSSRIELRGEVYMPKNSFARLNEAADAEGRTPFANPRNAAAGSLRQKD
PKVTASRDLATFIYAAAQTAPLQVHSQHQLLSWLNSAGFSVNPRATTCSSPSEVHTFCTE
ALAHRADLNYDIDGVVVKVDSFVQQADLGFTARAPRWAIAFKFPPEEKETVLREIRIQVG
RTGVLTPVAEFDPVSVAGSTIARATLHNEDEVHRKDVREGDTILVHKAGDVIPEVIGPVL
SKRPNSTAPWTMPTVCPACGSPVVHEEGEVAHRCVSLDCPAQLKERLIHWVSRGCMDVDG
LGDELVEKLIASGLLHDVSDFYRLTEADIAGIDTGRTYLKDDVRRGVHAGDSILVGKTIA
AKVIAELVASKQQPLSRVLFALGIRHVGKNVGEQIARHYLSINALIQAQEDEIAQIDGIG
PKIAQSIKQFLSVPENLQVLESLRQAGLTLEEDLSAATARMSAETGVSGELVDEQPLAGL
TFVLTGTLERRNRDEAGAALKALGAKVTNSVSKKTNYLVAGPGAGSKLTKAESLGVAVLD
EAALEHILETGEIPATA
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccatgtcagatatgccagaccttttttcctctcaaacaagcacagacctcccg
cttccttctcatgacgaggcagctgcacgagcggctgaactgcgcaatctacttgattac
catgcctatcgctactatcagcttgacgcaccggaaatctcggatgctgcttttgaccag
cttcttattgagctccagcaactggagtcttcctatcccgatttgataacgcctgagagc
tatacccagcgcgtgggcggctatgttgcggagcaatttagcccggtcacacatctggag
cgcatgtattctatggatgatgctatgaacatagaagagcttgacgagtggctgacgcgc
acggaagaagcgctcggtgcgggttcagtgacgtatacctgcgagcttaagattgatggc
ttgggggttgcgctgacctatgaaaacggtgcctttgtgcgtgcagccacacgtggtgac
ggcacaacaggcgaagatgtctcgctcaatattcgtacagtgcgcgatgttcccatgcat
ttgagcgagtcggcactggcacatatgggcgctgagcgttcttcgcgcattgagctacgc
ggcgaggtctatatgccaaaaaacagttttgcgcgcttgaatgaagcagccgatgccgag
ggtcgcactccctttgctaatccgcgcaatgctgctgcgggcagcttgcgccagaaagac
cccaaggtcacagcctcgcgtgacctcgcaacgtttatatatgcggcagctcaaacggcg
ccgcttcaggtgcactcacagcatcagctgctttcttggctgaactcggcagggttttcg
gtcaatcctcgtgctacaacatgctcttcgccatctgaggttcatacattttgtactgag
gcgctcgcgcatcgtgctgaccttaactacgacatcgatggtgttgttgtaaaggttgat
agttttgttcagcaagcagatttaggttttacggcacgcgctccacgctgggcaattgcc
tttaagtttccgcctgaggaaaaagaaaccgtgctgcgcgagattcgcatccaggtgggc
cgtacgggcgtgttgaccccggtggcagagtttgacccggtgagcgttgcgggctctact
atcgcccgcgcaacccttcacaatgaagatgaggtgcatcgcaaggacgtgcgtgagggc
gatacgattttagtccataaagccggtgacgtaatccctgaggtcatcggccctgtgttg
tccaagcgcccaaattcgaccgcaccctggactatgcctacagtgtgcccagcttgcgga
agcccagttgtccacgaagaaggagaggtagcgcatcgctgtgtgtcgctggattgtccg
gcgcagcttaaggaacgtttgattcactgggtaagcaggggatgcatggatgtcgatggc
ctaggcgatgaactggtcgagaaacttatcgcttcagggctcttacacgatgtttcagat
ttttatcgcctcacggaggcggatattgcgggcatagacacgggtcgaacctatctcaaa
gatgatgttcgtcgtggcgtacatgcaggcgactctatcttggtgggaaagactattgca
gctaaggttattgccgagcttgtggcttccaaacagcagccgcttagccgtgttttattt
gcattgggaattaggcatgtgggcaaaaatgtgggcgagcagattgcgcggcattatttg
agtatcaatgcacttattcaggctcaagaagatgagattgcacaaattgatggtattggt
ccaaaaattgctcaaagcatcaagcagttcttgtcggtacctgagaatttacaggtactt
gagagcttgcgccaggctggacttacgcttgaagaggatttgagcgccgcaacagcacgc
atgagtgctgagacgggtgtttcgggtgaactggtagatgaacagccattggctgggctt
acgtttgtgttaacaggaacacttgagcggcgcaatcgtgacgaggcgggtgccgcgctg
aaggctttgggtgcgaaagttactaattcggtgtcgaaaaagacgaattatctcgttgct
gggccgggagcgggttctaagctcacaaaggcggagagcttaggagttgcagtgcttgat
gaggcagcacttgagcacattttagaaacaggggaaataccagcaacggcatag
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