Comamonas sp. B21-038: MJ205_07905
Help
Entry
MJ205_07905 CDS
T10658
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
comb Comamonas sp. B21-038
Pathway
comb03030
DNA replication
comb03410
Base excision repair
comb03420
Nucleotide excision repair
comb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MJ205_07905 (ligA)
03410 Base excision repair
MJ205_07905 (ligA)
03420 Nucleotide excision repair
MJ205_07905 (ligA)
03430 Mismatch repair
MJ205_07905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
comb03032
]
MJ205_07905 (ligA)
03400 DNA repair and recombination proteins [BR:
comb03400
]
MJ205_07905 (ligA)
Enzymes [BR:
comb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MJ205_07905 (ligA)
DNA replication proteins [BR:
comb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MJ205_07905 (ligA)
DNA repair and recombination proteins [BR:
comb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MJ205_07905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MJ205_07905 (ligA)
MMR (mismatch excision repair)
DNA ligase
MJ205_07905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MJ205_07905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ULR90760
UniProt:
A0AAN0KT18
LinkDB
All DBs
Position
1753941..1756034
Genome browser
AA seq
697 aa
AA seq
DB search
MAENIDLFASPASGTPQDAAAEVQALRAQLVQWAHEYYVQDAPTVPDGEYDRVYQRLEAL
EKAHPELHSPDSPTQRVIGAILEGLTPVRHAVPMLSIRTETDNEASGAQAFDARIRKELG
LDPGDPPVEYVAEPKFDGLAMNLRYEAGRLVQATTRGDGEVGEDVTHNIRTIRQIPLQLR
ADAAVPPVLEVRGEVYMRRDDFDALNRKQEAAGGKTFVNPRNAAAGAVRQLDSNITAQRP
LSFFAYGLGEVTPVAQGGMQWDSHYAMLMQLRAWGFPVAPQVCVAKGADELVAFHQRMGA
ERANLGYEIDGVVYKVNSRALQLELGFVSREPRWAVAHKYPAQEMVTRLEGIEVQVGRTG
KLTPVARLAPVFVGGVTVTNATLSNVFDIRKKGVRVGDDVIVRRAGDVIPEVAGRVPGVR
PQYVPNFSMPSQCPVCGSDVVREKGEANHRCTGGLFCVAQRKEAILHYAHRRAMDIEGLG
DKLVDQLVDSGVIRSLPDLYKLGIATLSGLERMAEKSAQNVLAALESSKKTTLARFVFGL
GIRHVGESTAKDLAKHFGVLDAIMDASVEELLQVNDVGPVVANSLHTFFAQPHNREVVEQ
LRAAGVHWDEAVPAEKPAQILAGMTVVLTGTLPTMGRDEAKDLLEAAGAKVSGSVSKKTH
YLVAGADAGSKLSKAQELGVTVLDEAAMLRLLQHGAP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatattgatctttttgcctcgcccgccagcggtaccccgcaggatgctgct
gccgaggtgcaggccttgcgcgcgcaactggtgcagtgggcgcatgaatactatgtgcaa
gacgcgcccacggtgcccgatggcgagtatgaccgggtctaccagcggctcgaagcgctg
gaaaaggcccaccccgagctgcacagtccggactcgcccacgcagcgtgtgatcggcgcc
attctcgaggggctgaccccggttcgccatgcggtgccgatgctgagcatccgcaccgaa
accgacaatgaagccagcggcgcgcaagccttcgatgcacgcatccgcaaggagctgggc
ctggaccccggtgacccgccggtcgagtatgtggccgagcccaaatttgatggcctggcg
atgaacctgcgctacgaggcggggcgcctggtgcaggccaccacgcgcggcgatggtgaa
gtgggcgaggacgtcacccacaatatccgcactatccgccagataccgctgcagctgcgc
gccgatgccgcggtgccgccggtgctggaagtgcgcggcgaggtgtatatgcgccgcgat
gattttgatgccctcaaccgcaagcaggaggccgctggcggcaagacctttgtcaacccg
cgcaacgcagcagccggcgcagtgcgccaactcgactcgaacatcaccgcccagcgcccg
ctgtccttctttgcctatggcctgggcgaggtcaccccggtggcccaaggcggcatgcag
tgggacagccactacgcgatgctgatgcagctgcgcgcctggggctttccggtcgcgccc
caggtctgtgtggccaagggcgccgacgagctggtggcctttcaccagcgcatgggcgcc
gagcgtgccaacctgggctacgagatcgacggtgtggtctacaaggtcaacagccgcgcg
ctgcagctggagctgggctttgtcagccgcgagccgcgctgggccgtggcccacaagtac
ccggcccaggagatggtcacgcgtctggagggcattgaggtccaggtgggccgcaccggc
aagctcacgccagtggcccggttggcgcccgtgtttgtcggtggcgtcaccgtcaccaat
gccaccttgtccaatgtgttcgacatccgcaagaaaggggtgcgcgttggtgacgacgtc
atcgtgcggcgggccggcgatgtgattccggaggtcgccgggcgggtgcctggagtgcgc
ccgcagtatgtgcccaatttctcgatgcccagccaatgcccggtctgcggcagcgacgtg
gtgcgcgagaaaggcgaggccaaccaccgatgcaccggtggcctgttctgcgtggcgcag
cgcaaggaggcgatcctgcactacgcgcaccgccgcgcgatggatatcgaaggcctgggc
gacaagctggtcgatcagctggtagacagcggtgtgatccgcagcctgcccgacctctac
aaactgggtattgcgaccttgtcaggcctggagcgcatggcagagaagtccgcacagaat
gtgctggccgcgctggagtcgtcgaagaaaaccacactggcgcgctttgtgtttggcctg
ggcatccgccatgtgggcgagtccaccgccaaggacctggccaagcactttggcgtgctg
gacgcgatcatggatgcgtcggtcgaagagctgctgcaggtgaatgacgtggggccggtg
gtggccaacagcctgcacaccttttttgcgcagccacacaaccgcgaagtggttgagcag
ctgcgcgctgcgggcgtgcactgggacgaagcggtgcctgccgaaaagcccgcgcagatc
ctggccggcatgacggtggtgctgaccggcacgctgcccaccatgggccgtgatgaggcc
aaagacctgctggaagccgcaggcgccaaggtctctggctcggtcagcaagaagacccat
tacctggtggccggcgccgatgccggcagcaaactgagcaaggcgcaggagctgggagtg
accgtgctggacgaggctgcgatgctgcggcttttgcaacatggagcgccttga
DBGET
integrated database retrieval system
