Actibacterium sp. EMB200-NS6: TQ29_08605
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Entry
TQ29_08605 CDS
T04096
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
con
Actibacterium sp. EMB200-NS6
Pathway
con03030
DNA replication
con03410
Base excision repair
con03420
Nucleotide excision repair
con03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
con00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TQ29_08605
03410 Base excision repair
TQ29_08605
03420 Nucleotide excision repair
TQ29_08605
03430 Mismatch repair
TQ29_08605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
con03032
]
TQ29_08605
03400 DNA repair and recombination proteins [BR:
con03400
]
TQ29_08605
Enzymes [BR:
con01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TQ29_08605
DNA replication proteins [BR:
con03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TQ29_08605
DNA repair and recombination proteins [BR:
con03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TQ29_08605
NER (nucleotide excision repair)
GGR (global genome repair) factors
TQ29_08605
MMR (mismatch excision repair)
DNA ligase
TQ29_08605
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TQ29_08605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ALG90241
LinkDB
All DBs
Position
1754361..1756481
Genome browser
AA seq
706 aa
AA seq
DB search
MAGEKPVEQLTAAEAAAELAQLAAQIARADRLYHQQDAPEISDAAYDALKRRNAEIEAAF
PALKRADSPSESVGAAPAEGFSKIRHAVRMLSLANAFDDGDITEFDGRIRKYLGLSDDAP
LIYTAEPKIDGLSLSLRYEAGVLTQAATRGDGETGENVTANARTIADIPARLAGAPEVLE
VRGEVYMSHVDFEALNVRQAEAGEKPFANPRNAAAGSLRQLDADVTRQRPLRFFAYGWGE
LSAALAPTQKGAIDRLAELGFQTNPLTVLCDGPEAMLRHYRAIEEQRSTLGYDIDGVVYK
VDDLSLQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIAGRDAKGNEIRGGKDIREGDWVQVYRAGDVIPKVADVDLSKRPDDA
APYVFPTHCPECGSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRGAFDIDGLGAKQV
EAFYQDGWIREPADIFTLKARYGAGLQQLRNREGWGQKSAENLFEAIEARREIPLNRVIF
ALGIRHVGESASTLLASNYGSWAAFEAAMTAAQVGEGPEWEALIGIDGVGAVMAEAVVTT
FHQAAERASIDRLIAELNVQDMEARGAVDSPVAGKTVVFTGTLEKMTRAEAKARAEALGA
RVAGSVSARTDLLVAGPGAGSKAKKAAELGVETIDEDGWLALIGDA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgaaaaacccgtcgaacagctgacggcggcagaggcggcggcggaacttgcg
cagcttgcggcgcagatcgcgcgcgctgacaggttgtatcatcagcaggacgcgccggaa
atctccgatgcggcctatgacgcgctgaagcggcgcaacgccgaaatcgaggcggcgttc
ccggcgttgaaacgggccgacagcccctctgaaagtgtcggcgcagccccggccgagggg
ttttccaagatacggcacgccgtgcgcatgctctcgctcgccaatgcgttcgacgacggt
gatattacggaattcgacgggcgcatccgcaaatacctggggctgagcgatgacgcgccg
ctgatctataccgccgagcccaagatcgacgggctgtccctgtctctgcgctacgaggcc
ggtgtgctgacccaggccgccacccgtggcgacggcgaaaccggcgagaacgtcaccgcc
aatgcccgcaccatcgccgatatccccgcgcgtctcgccggtgcgcccgaggtgctggag
gtgcggggcgaggtttacatgagccacgtggatttcgaggcgctgaacgtgcggcaggcc
gaggcgggcgagaagcccttcgccaacccgcgcaacgctgcggcgggatcgctgcgccag
cttgatgcggatgtaacgcggcaacggccattgcgtttcttcgcctatggttggggtgaa
ctctccgccgcgctggcgccgacgcaaaagggcgcgatcgacaggctggcggagctgggg
tttcagaccaacccgctgaccgtgctgtgcgatggccccgaggcgatgctgcgccactac
cgcgcgatcgaggaacagcgttcaacgctgggctatgacatcgacggggtggtctacaag
gtggacgacctgtcgcttcaggcgcgcctgggctttcgttcgacgacgccgcgatgggcg
atcgcccacaagttccccgccgaactggcctggacccggctggagaagatcgagattcag
gtgggccgcaccggcgcgctgtcgccggtggcgcggctgcatccggtgacggtggggggc
gtggtggtgtcgaacgccacgctgcacaacgaggattacatcgccgggcgcgacgccaag
ggcaatgagatccgcggcggcaaggacatccgcgagggcgactgggtgcaggtctatcgc
gcgggtgacgtgattccgaaagtggcggatgtggatctgtcgaaacggcccgacgacgcg
gcgccctatgtgtttccgacccactgccccgaatgcggctcggaagcgatccgggaggag
ggcgacgccgtgcgccgctgcaccggcgggctgatctgcccggcgcaggccgtggaaaaa
ctgaagcacttcgtgtcgcgcggcgcgttcgacatcgacggcctgggcgccaagcaggtg
gaggccttttatcaggatggctggatcagggagccggccgatatcttcacgctgaaggcg
cgctatggcgcgggcctccagcagctcaggaatcgcgagggctggggccagaaatccgcc
gaaaacctgtttgaggcgatagaggcacgccgggaaatcccgttgaaccgggtgattttc
gcccttggcatccgccatgtgggcgaaagcgcgtcaacgcttctggccagcaactacggc
agctgggcggcgttcgaggccgcgatgaccgccgcgcaggtgggcgaagggcccgagtgg
gaggcgttgatcggcatcgacggggtcggcgcggtgatggccgaggcggttgtcaccacc
tttcatcaggcggcggaacgggcctcgatcgaccggctgatcgcggagctgaacgtgcag
gacatggaagcgcgcggcgcggtcgacagcccggtggcgggcaagaccgtggtctttacc
ggcacgctggaaaagatgacccgggccgaggccaaggcgcgcgccgaggcgctgggggcc
agggtggccgggtcggtttcggccaggaccgatctgctggtcgcggggccgggggcgggg
tctaaggcgaagaaggcggccgagctgggcgtggaaaccatcgacgaagatggctggctc
gcgctgatcggagacgcatga
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integrated database retrieval system
