Coprobacter secundus subsp. similis: Cop2CBH44_06840
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Entry
Cop2CBH44_06840 CDS
T06867
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
copr
Coprobacter secundus subsp. similis
Pathway
copr03030
DNA replication
copr03410
Base excision repair
copr03420
Nucleotide excision repair
copr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
copr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cop2CBH44_06840 (ligA)
03410 Base excision repair
Cop2CBH44_06840 (ligA)
03420 Nucleotide excision repair
Cop2CBH44_06840 (ligA)
03430 Mismatch repair
Cop2CBH44_06840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
copr03032
]
Cop2CBH44_06840 (ligA)
03400 DNA repair and recombination proteins [BR:
copr03400
]
Cop2CBH44_06840 (ligA)
Enzymes [BR:
copr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cop2CBH44_06840 (ligA)
DNA replication proteins [BR:
copr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cop2CBH44_06840 (ligA)
DNA repair and recombination proteins [BR:
copr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cop2CBH44_06840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cop2CBH44_06840 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cop2CBH44_06840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cop2CBH44_06840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_3
RNA_pol_A_CTD
Auto_anti-p27
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BCI62331
UniProt:
A0A7G1HUY2
LinkDB
All DBs
Position
complement(920005..922008)
Genome browser
AA seq
667 aa
AA seq
DB search
MDEIKNKIDELRQKLNEHNYNYYVCNSPTISDRDFDMMMDELQKLEEKYPEFNDPNSPTQ
RVGNDINKSFSQVEHKYPMLSLGNTYTKEEVEAFYERVKSGLNDNFKIVGELKYDGTSIS
LTYINGKLVRAVTRGDGVRGDDVTENVKTIRSIPLQLRGSNYPKEFEIRGEILMPWTVFE
ALNEERERQEEPLFANPRNAAAGTLKSQNSAVVASRNLDAYLYYILGDGLPSDSHYENLQ
IARSWGFKISDAMKVCDTLDDMMSFIDYWDINRKNLPVATDGIVFKVSSLLQQKNLGYTA
KSPRWAIAYKFQAERAITRLNSVSYQVGRTGTITPVANLEPVQLSGTIVKRASLHNDDII
QSLDLHIGDMVYVEKGGEIIPKITGVDKDTRMLIGEKVHFIKRCPECNTPLIRYEGEAAH
YCPNEDGCPPQIKGKIEHFISRKAMNIDGLGPETIDLFYRIGWLKDVSDLYHLKENEIAE
QERLGEKSAKNIVEAIENSRNVPFERVLFALGIHFVGETVAKKLANAFINIDALMNASEE
DLISVDEIGIKIAQSIHKYFEKEGHLSLISRLKDAGLQFALSRERLENQSDRLKGATIVI
SGTFNHHSRDEYKLLIEQNGGKNTGSVSAKTSYLLAGENMGPAKLEKAKKLGIKIISETD
FLEMIQS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaataaaaaataaaattgacgagctcaggcaaaagcttaatgagcataattat
aactattatgtatgtaattcaccaactatatcagaccgagactttgatatgatgatggac
gaattacaaaaactggaagaaaaatatcccgaatttaatgatccgaattctccaactcaa
agagtgggaaatgatataaataaatcattttctcaagtcgaacataaatatccgatgctt
tctttgggtaacacctatacaaaagaagaggtagaagctttctatgaacgtgttaaaagt
ggactgaacgataatttcaaaatcgtaggagaattgaaatatgatgggacatcgatttct
cttacttatatcaatgggaaattggtacgtgctgttacccgaggtgatggtgtcagggga
gatgatgtcactgaaaatgtaaagaccatccgaagtattcctttgcaattgagaggaagc
aattatccaaaggaatttgaaataagaggtgaaatccttatgccttggactgtattcgaa
gcattgaatgaagaacgggagagacaggaagaacctctctttgccaatcctcgtaatgct
gcggccggaactcttaaatctcaaaattctgcagttgtagcttctcgaaatttagatgca
tatttgtactatatattaggtgatggacttccgtcagatagtcattatgaaaacttgcaa
atagctcgtagttggggatttaagatttctgatgcaatgaaggtctgtgatacgctcgat
gatatgatgagtttcatcgattattgggatattaaccgaaagaatttgcctgttgcaact
gatggtatagtattcaaagtatcgtctcttttacaacagaaaaatttgggttatacagca
aaatctccacgatgggccattgcttataaattccaagcagaacgagctataacacgattg
aattctgtgtcttaccaggttggacgtacgggaacaattactcccgtagccaatctcgaa
ccagtacaactatcaggaaccattgtcaaaagggcatctttacacaatgacgacattatt
cagtctcttgacttacatattggtgatatggtatatgtcgaaaaggggggagaaatcatt
cctaaaataacgggggtcgataaggatacaagaatgctaatcggtgagaaggttcatttt
ataaagcgctgcccggaatgtaacacaccattaatcagatatgaaggagaagctgcacac
tattgtccaaatgaagacggttgtcctcctcagataaaaggtaaaattgagcattttatc
agtcggaaggcgatgaatatagatggtttgggaccggaaacaatagaccttttttaccgt
attggatggctaaaagacgtatcagacctgtatcatttaaaggaaaatgaaattgccgag
caagaaagattgggggaaaagtcggcaaaaaatatagtcgaggctatcgaaaattcaagg
aatgttccattcgaacgtgttctttttgctttaggtattcattttgtaggagagactgtt
gcaaaaaagttagcaaatgcttttataaacatcgatgccttaatgaatgcttcagaagag
gatttaatatctgtcgatgaaataggaatcaaaatagcacaaagcatacataaatatttt
gagaaagaaggccatctaagccttatatcccgactaaaagatgcagggttgcaatttgcg
ctttcccgagaaagattagaaaatcaatcggatagattaaagggtgctactattgttatt
agtggtacatttaatcatcattcacgtgacgagtataaattattaatagagcagaacgga
gggaagaatacaggatcagtatctgctaaaacctcatatttattagcaggcgaaaacatg
gggccggcaaaacttgagaaagcaaaaaaattgggaataaaaataatctcggagactgac
tttttggaaatgatacaatcatga
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