Chryseobacterium oranimense: N0B40_10615
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Entry
N0B40_10615 CDS
T08904
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cora
Chryseobacterium oranimense
Pathway
cora03030
DNA replication
cora03410
Base excision repair
cora03420
Nucleotide excision repair
cora03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N0B40_10615 (ligA)
03410 Base excision repair
N0B40_10615 (ligA)
03420 Nucleotide excision repair
N0B40_10615 (ligA)
03430 Mismatch repair
N0B40_10615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cora03032
]
N0B40_10615 (ligA)
03400 DNA repair and recombination proteins [BR:
cora03400
]
N0B40_10615 (ligA)
Enzymes [BR:
cora01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N0B40_10615 (ligA)
DNA replication proteins [BR:
cora03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N0B40_10615 (ligA)
DNA repair and recombination proteins [BR:
cora03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N0B40_10615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0B40_10615 (ligA)
MMR (mismatch excision repair)
DNA ligase
N0B40_10615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N0B40_10615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_lig_T4_1
BRCT_2
HVO_0758
Dna2
RNA_ligase
DUF7575
Zn_ribbon_double
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UWX58893
LinkDB
All DBs
Position
2284183..2286189
Genome browser
AA seq
668 aa
AA seq
DB search
MPENIQQKIEQLRKELHQHNENYYLLDAATISDYDFDMLLEELRDLEAKHPEFYDENSPT
VRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTINDPVEFVAELKYDGASI
SILYENGKLVQAVTRGDGFQGDEITANVRTISDIPLTLKGDFPAHFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISEDVPAQSHWELLQ
KAQSWGFKTSQQAKLCKTMDEVKEFISFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETQLQTVAYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTEKRTEESKEIEYIRHCPECGTELVKIEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYRERLIENPADFYALTKEQILP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFATIDELKAATVE
ELCQVEDIGAKIAVSIVEFFSNPENILMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTREQAEEMVEKHGGKNISAVSKNLNFLVVGEKAGSKLKKAQDIGTITILDEQE
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaacatacagcaaaaaatagaacagctccggaaagagcttcaccagcataac
gaaaattactaccttctggatgcagctaccatctctgattatgattttgatatgctgctg
gaagagcttcgcgacctggaggcaaagcatcctgaattttatgatgaaaattcgcctact
gtacgtgtaggaggtggaatcaccaaggtttttcctaccattcagcataagttcagaatg
tattccctggataattcttatgattttgatgatcttgaagattgggagaaaagaattatc
aagacgatcaatgatcctgtggaatttgttgcggaactgaagtatgacggtgcttctatt
tctatcctgtatgaaaacggaaaactggttcaggctgtaacgcgtggtgatggcttccag
ggagacgaaattactgcaaatgtccgaactatttcagatattcctcttactttaaagggt
gattttcctgctcatttttttatgaggggtgaaatttatcttacccgtaaaaactttgac
aagatcaataaactgcgtgaagaagaaggcctggacccttttatgaatccaagaaatact
gccagcggaagtttaaagatgcaggacagcggtgaggtaagaaaacgcggtctgtcatcg
gtactttaccagtttatttctgaggatgttcctgcacagagtcactgggaactgcttcag
aaggcccaaagctggggctttaaaacttcacagcaggcaaagctatgtaaaacaatggat
gaggtgaaggagttcatcagtttctgggatacggaacgacataatcttccttttgagatt
gacggaattgttttaaaggtcaattctttgcaacagcagagacagcttggttacacggca
aaatcaccaagatgggccatggcttataagtttaaagctgaaaaggtagaaacgcagctt
cagactgtagcttaccaggtgggaagaaccggcgcgattactcctgtagctaatctgaaa
cctgttttactggctggaacgatcgtaaaaagagcttctcttcacaatgaagatatcatc
aaaaaacttgacctgcacgagcatgattttgtgtatgtggaaaaaggcggcgaaatcatc
ccaaaaattgtaggtgtcaatactgaaaagagaactgaagaaagtaaagaaatagaatat
atcaggcattgccctgaatgtggtaccgagcttgtaaaaatagaagaccaggccatccat
ttctgtcctaatgatcttcactgtccgcctcaggtagtgggaagaatgatccattacgtt
tccagaaaggctttgaacatcgaaaatctgggcagtgaaactattgaacagctttacaga
gaacgattaatcgaaaatccggcagacttttatgctttaacgaaagaacagatccttccg
ctggaaagaatggcagaaaaatctgcacagaatattatttcagggattgaaaagtcaaaa
gaaattccttttgaaaaggtactgtacggaatcgggatcaagcatgtgggagaaacggtt
gccaagaagctggtgaaaaatttcgccaccattgatgaactcaaggctgccactgtagag
gagctttgccaggtggaagatattggcgccaagattgcagtaagcatcgtggaattcttc
agcaaccctgaaaatatcctgatgatcgaacgtctgaaatcttacggtgtccagcttgaa
aagggagaaagtaccaacgaagtcctgtctaatgttctggaagggaaaactttccttttc
accggaaaattatctttgtttaccagggagcaggcggaagaaatggtggaaaaacatggc
ggaaagaatatttctgcagtctctaaaaacctcaacttccttgtggtaggcgaaaaggca
ggaagcaagctgaaaaaagctcaggatattggaactattaccattctggatgaacaggaa
tttctggatctgatagagaaacagtaa
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