Corynebacterium sp. Z-1: RIU96_07330
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Entry
RIU96_07330 CDS
T11129
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
core Corynebacterium sp. Z-1
Pathway
core03030
DNA replication
core03410
Base excision repair
core03420
Nucleotide excision repair
core03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIU96_07330 (ligA)
03410 Base excision repair
RIU96_07330 (ligA)
03420 Nucleotide excision repair
RIU96_07330 (ligA)
03430 Mismatch repair
RIU96_07330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
core03032
]
RIU96_07330 (ligA)
03400 DNA repair and recombination proteins [BR:
core03400
]
RIU96_07330 (ligA)
Enzymes [BR:
core01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIU96_07330 (ligA)
DNA replication proteins [BR:
core03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIU96_07330 (ligA)
DNA repair and recombination proteins [BR:
core03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIU96_07330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIU96_07330 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIU96_07330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIU96_07330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WNI12051
LinkDB
All DBs
Position
1496410..1498428
Genome browser
AA seq
672 aa
AA seq
DB search
MSDISADLHRQWDDLASQVRHHRDLYYNGQPVISDAEFDKLFNNLVAFEEAHPELAVPES
PTKEVGAPVSSAFADVTHLERMMSLDNVFSAEELADWLAKTPGPYLTELKIDGLSIDLVY
ENGELVRAATRGDGRVGEDITANAKVIPDIPHTLTGDFPELLEVRGEVFIRPEDFPELNE
QRIAEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFAPQTQFEAYEKLA
EWGLPVSEYTRRAETAEQVQESVNYWAEHRHDAIHEMDGVVIKVDSVATQRSLGATSRAP
RWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVLVSGSTVSLATLHNQHEVKRK
GVLIGDTVVIRKAGEIIPEVLGPVADLRDGSEREFIYPKDCPACGTELAPAKEGDADWRC
PNTRSCPAQLSQRLKYLASRGAFDIEALGEKGAQDLIASGVLVDEGDLFDLTEEDLKKSS
AYTTKAGNVNAAGKKLLANLDTARERELWRVLVALSIRHVGPTAARALAARYTSMQALID
APITDLADTDGVGLVIARSFKDWFEEQWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTV
VVTGTLENFSRDEAKEAILARGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEA
QFEQLLATGSPA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacatttccgcagacctgcaccgccagtgggacgaccttgccagccaggtgcgt
caccaccgcgacctgtactacaacggccagccggtgatttccgacgctgaattcgacaag
ctgttcaacaatctcgtcgccttcgaggaggcccacccggagctggccgtgccggagtcg
ccgaccaaggaagtcggcgctcccgtctccagcgcgtttgccgacgtcactcacctcgaa
cgcatgatgagcctggataacgtgttctccgcggaggagctcgccgactggctggccaag
acgccggggccgtacctgacggagctgaaaatcgacgggttgtcgatcgacttggtttac
gaaaacggcgagctggttcgcgccgccacgcgtggcgacggccgcgtcggcgaggacatc
accgccaacgccaaagtcatccccgatatcccgcacaccctcactggagacttccccgaa
ctgctagaagtccgcggcgaggtgttcatccgccccgaggacttccccgagcttaacgag
cagcgcatcgccgagggtggcaagccgttcgccaacccgcgcaacaccgccgcgggcggg
ctgcgccagaaaaaccccgaggacgtgaaaaagcgtaagctgcgcatgatctgccacggc
atcggcgcgcgcgagggctttgccccgcagacccagttcgaggcctacgaaaagctcgcc
gagtggggccttccggtctccgagtacacgcgccgggccgagacggccgagcaggttcag
gagtcagtgaactactgggccgagcatcgccacgacgcgatccacgagatggacggggtg
gtgatcaaggtggactccgtcgctacgcagcgttctctgggcgcgacctcgcgcgcgccg
cgctgggcgatcgcgtacaagtacccgccggaggaggtgaccacgaagctcctcgacatc
gaggtctcggttgggcgcaccggccgcgccaccccgttcgcggtgctggagccggtgctc
gtctccggctccacggtgtcactggcgacgctgcacaaccagcacgaggtcaagcgcaag
ggtgtgctcatcggcgacacggtcgtgatccgcaaggccggcgagatcatccccgaggtg
ctgggcccagttgcggacctacgcgacggcagcgagcgcgagttcatctacccgaaggac
tgcccggcgtgcggcacggagctcgccccggcgaaggagggcgacgcggactggcgctgc
ccgaacacgcgctcctgcccggcgcagctgtcgcagcggctcaagtacctggcgtcccgc
ggtgccttcgacatcgaggcgctcggggagaagggcgcccaggacctcatcgcctcgggc
gtcctcgtcgacgagggcgacctgttcgacctcaccgaggaggacttgaagaagtccagc
gcgtacaccaccaaggcgggcaacgtcaacgccgcaggtaagaagctgctggccaaccta
gacaccgcgcgcgagcgggagctgtggcgcgtgctcgtcgccctgtcgatccgccacgtc
gggccgaccgcagcccgcgcgctcgccgcgcgctacacctccatgcaggcgcttatcgac
gcccccatcaccgacctcgccgacaccgacggcgtgggcctggtcatcgcgcgatccttc
aaggactggttcgaggagcagtggcaccgcgacatcgtagacaagtgggccaaagccggt
gtgcggatggtcgacgacaccaccgacgccgctccgcagaccctcgaggggcttaccgtc
gtggtgacgggaaccctggagaacttctcgcgcgatgaagccaaggaggcgattttggcc
cgcggcggcaaggcggctggctccgtgtcgaagaagacgagctacgttgtcgttggcgag
aacgccggctcgaaggaggacaaggcccgcgagctgggcgtgccgatcctcaacgaggcg
cagtttgagcagttgcttgcaaccggctcgcctgcgtag
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integrated database retrieval system
