Corynebacterium sp. SCR221107: PAB09_05900
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Entry
PAB09_05900 CDS
T11128
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cors Corynebacterium sp. SCR221107
Pathway
cors03030
DNA replication
cors03410
Base excision repair
cors03420
Nucleotide excision repair
cors03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cors00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAB09_05900 (ligA)
03410 Base excision repair
PAB09_05900 (ligA)
03420 Nucleotide excision repair
PAB09_05900 (ligA)
03430 Mismatch repair
PAB09_05900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cors03032
]
PAB09_05900 (ligA)
03400 DNA repair and recombination proteins [BR:
cors03400
]
PAB09_05900 (ligA)
Enzymes [BR:
cors01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAB09_05900 (ligA)
DNA replication proteins [BR:
cors03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAB09_05900 (ligA)
DNA repair and recombination proteins [BR:
cors03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAB09_05900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAB09_05900 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAB09_05900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAB09_05900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DUF7089
Motif
Other DBs
NCBI-ProteinID:
WBT10022
LinkDB
All DBs
Position
1331628..1333718
Genome browser
AA seq
696 aa
AA seq
DB search
MLPEDAVIAQEGAKNAKVSEQGLTQLRRTWDDLAEQVRYHRDLYYNKTPEISDAEFDELF
QQLQELEAQHPELAVPDSPTMEVGAPTQSSFNNVEHLERMLSLDNVFSPEELGEWLARTP
AHTYLTELKIDGLSLDVIYREGRLDRAATRGDGRIGEDVTENARVITDLPHMLTAHPDFP
IPAVLEIRGEVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVRKRKLRMI
CHGIGYTEGFTPESQYHAYEALAAWGLPVSQYTERVHTAEEVQAKVAYWANHRHDALHEM
DGLVVKVDDIAAQRNMGATARAPRWAIAYKYPPEEVTTTLLDIQVGVGRTGRVTPFAVMT
PVFVAGSTVAMATLHNQTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREFVF
PTNCPSCGAVLAPQKEDDADWRCPNTKSCPAQLSARLTYLAGRGAFDIEALGEKAAEDLI
TSGALENEAGLFDLTEDDLLKTSVYTTKKGTLNATGRKLLKNLETSKDTDLWRVLVALSI
RHVGPTAARALAQKFRSLEAARHASIEDLAQTEGVGEIIAESFKSWFDVDWHREIIDAWA
RAGVRMEDDVKDAPEQVLEGLTIVVTGTLENFSRDSAKEAIVIRGGKAAGSVSKKTSFVV
VGANAGSKETKARELGLPILNEEEFVTLLEGGPEAV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgctgccagaggacgcagtcatcgcccaggagggggcaaaaaatgcgaaggtaagcgag
caaggcctcacccagttgcgccgcacatgggatgaccttgccgaacaggtgcgttatcac
cgagatctctactacaacaagactcctgagatctccgatgcggagttcgacgaactgttc
cagcaattgcaggagcttgaggcgcagcatccggagctcgccgtgccggatagccccacg
atggaggtgggcgcacccacgcagtccagcttcaataatgtcgagcacctcgagcgcatg
ctcagcctcgataatgtgttcagccccgaggaacttggagaatggctagcgcgtacgccg
gcacacacctatctcactgagctcaagatcgacggcctttccctcgacgtcatctatcgc
gaaggaaggctggatcgagcagccacccgtggtgatggtcgcatcggcgaggatgtgaca
gaaaacgcccgcgtgatcaccgacctgccacatatgctcaccgcgcaccctgattttccg
atccctgccgtgctggaaatccgaggtgaggtttttatcgccgtggaggacttcgccgcg
gtcaatgagcagcgccagttggaaggcggtaagccgtttgccaacccgcgcaacgcggct
gccggttcattgcgccaaaaggatgtcgaggcggtgcgcaaacgcaaactgcgcatgatt
tgtcacggcatcggctacacggaaggctttaccccggagtcccagtaccacgcctacgag
gctctggcggcctggggcctgcccgtttcgcagtacaccgagcgtgtacataccgccgag
gaggtccaagcaaaggtagcgtactgggcgaatcaccgacacgacgcactccatgagatg
gacgggcttgtggtcaaggtggacgatattgcggcgcagcgcaacatgggtgctactgcg
cgcgctccgcgttgggcgattgcctacaagtatccgccggaagaagtcaccactacgctg
cttgacatccaggtcggcgtagggcgcactgggcgtgtgaccccctttgccgtgatgacc
ccggtatttgttgccggttctacggtggcgatggccaccttgcacaatcagaccgaggtc
aaacgcaagggcgtgctcatcggggacaccgtggtcatccgtaaagcaggggaggtcatc
cccgaggttctaggccccgtggtcgaaaagcgggacggaaccgagcgcgagttcgttttc
cccaccaactgcccctcctgcggagccgtcctcgcaccgcaaaaggaagacgatgcggat
tggcgctgccccaacaccaagtcctgccccgcgcagctgtcggcgcgcctgacctacctc
gctggccgtggcgcctttgacattgaggcgctgggggagaaggcagcagaggaccttatt
acgtctggggccttggaaaacgaggcggggctttttgatctcaccgaagacgatctgctc
aagaccagcgtctataccacgaagaagggcactcttaacgccacgggcagaaagctgctt
aagaacttggagacgtcgaaggacaccgacctgtggcgggtattggtggcgctgtcgatt
cgacacgtcggtccgacggccgcgcgcgccttggctcagaagttccgcagcctagaggca
gctcgtcacgccagcatcgaggatctagcgcagaccgaaggagtcggcgagattatcgcc
gaaagcttcaagagctggttcgacgtcgactggcatcgagagatcatcgatgcgtgggct
cgcgccggggttcgcatggaagacgatgtcaaggatgcacccgagcaagtcctcgagggc
cttaccatcgtggtcaccggcacgctggaaaacttcagccgcgattctgccaaggaagcg
atcgtgatccgaggcggcaaggccgcggggtcggtgtcgaagaagacgagctttgttgtg
gtcggggcaaacgccggttccaaggaaacgaaggcacgagaacttggcctgcccatcctc
aacgaggaggaattcgtcacgttgctcgaaggcgggccggaggccgtgtaa
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